Resource

Id Histone_ChIP-seq/ENCSR009RJDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR009RJD [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR009RJD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (51 years)
  • date_created: 2018-10-31T03:15:10.495468+00:00
  • date_released: 2018-12-14
  • doi: 10.17989/ENCSR009RJD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR009RJD float

Histone_ChIP-seq_ENCSR009RJD
Histone_ChIP-seq ENCSR009RJD [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR009RJD [1.32, 14.8]
n
208,590,346
mean
4.95
sd
1.68

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2085903466.48% 140109
chr1 21146880 8.49% 13587
chr2 16629050 6.87% 11500
chr3 14314463 7.22% 9845
chr4 9105927 4.79% 6693
chr5 11085892 6.11% 7709
chr6 11487970 6.73% 8210
chr7 10008595 6.28% 7030
chr8 8908982 6.14% 6229
chr9 9682741 7.00% 6218
chr10 10946386 8.18% 7146
chr11 11153812 8.26% 7108
chr12 10154705 7.62% 7032
chr13 4919821 4.30% 3531
chr14 7296154 6.82% 4774
chr15 7427325 7.28% 4917
chr16 7433189 8.23% 4721
chr17 10352438 12.43% 6202
chr18 3949773 4.91% 2901
chr19 7248741 12.37% 4426
chr20 5810796 9.02% 3700
chr21 2323588 4.97% 1645
chr22 4993489 9.83% 2941
chrX 2209142 1.42% 2043
chrY 487 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 140109 240 49366 1488.77 1068
global segment-length histogram

Files

Filename Size md5
ENCFF931CQV.bed.gz 3.05 MB e8d29e135b9f3bf2f0542e48a0edcd81
ENCFF931CQV.tabix.bed.gz 1.43 MB cb3197f66498993b19ee38ec10909e16
ENCFF931CQV.tabix.bed.gz.tbi 328.1 KB 2fb3b171cb1d2ebf68b13eed01030612
genomic_resource.yaml 1.5 KB 6078433fdf655b77133b54c078d0d765
statistics/