Resource
| Id | Histone_ChIP-seq/ENCSR009MUF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR009MUF [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (67 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN545HCP|/analyses/ENCAN545HCP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF435UWW|/files/ENCFF435UWW/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 36697025 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR009MUF | float |
Histone_ChIP-seq_ENCSR009MUF |
Histone_ChIP-seq ENCSR009MUF [biosample_summary="Homo sapiens kidney tissue male adult (67 years)" and target="H3K4me1"]
|
 |
[1.77, 37] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46168879 | 1.43% | 108760 |
| chr1 | 4863912 | 1.95% | 11110 |
| chr2 | 3482229 | 1.44% | 8513 |
| chr3 | 2716944 | 1.37% | 6626 |
| chr4 | 1564236 | 0.82% | 4060 |
| chr5 | 2126058 | 1.17% | 5312 |
| chr6 | 2155437 | 1.26% | 5655 |
| chr7 | 1881971 | 1.18% | 4697 |
| chr8 | 1641290 | 1.13% | 4095 |
| chr9 | 2341323 | 1.69% | 5180 |
| chr10 | 2360735 | 1.76% | 5587 |
| chr11 | 2802811 | 2.07% | 6388 |
| chr12 | 2180762 | 1.64% | 5159 |
| chr13 | 885497 | 0.77% | 2342 |
| chr14 | 1626617 | 1.52% | 3830 |
| chr15 | 1640876 | 1.61% | 3917 |
| chr16 | 2095472 | 2.32% | 4585 |
| chr17 | 2999358 | 3.60% | 6380 |
| chr18 | 811946 | 1.01% | 2129 |
| chr19 | 2186922 | 3.73% | 4475 |
| chr20 | 1384731 | 2.15% | 3167 |
| chr21 | 494360 | 1.06% | 1187 |
| chr22 | 1495381 | 2.94% | 3118 |
| chrX | 420177 | 0.27% | 1218 |
| chrY | 9834 | 0.02% | 30 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108760 | 165 | 8219 | 424.5 | 328 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF249OJK.bed.gz | 2.06 MB | 7040c5425715cdcdc3bf852a7e34b0ce |
| ENCFF249OJK.tabix.bed.gz | 1.04 MB | 96e86b897898b11d05479369222a4ae9 |
| ENCFF249OJK.tabix.bed.gz.tbi | 293.96 KB | 0b899156682717cd07807d23138512d4 |
| genomic_resource.yaml | 1.98 KB | 308250f2b646de88f92ce0c7659349f9 |
| statistics/ |