Histone_ChIP-seq_ENCSR007YOT
Histone_ChIP-seq ENCSR007YOT [biosample_summary="Homo sapiens GM23248" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR007YOT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR007YOT [biosamplesummary="Homo sapiens GM23248" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN736RBO|/analyses/ENCAN736RBO/} has in progress subobject document {2ef151ec-d326-4a3d-ba1f-5f0b88223d06|/documents/2ef151ec-d326-4a3d-ba1f-5f0b88223d06/} audit_internal_action: Released analysis {ENCAN736RBO|/analyses/ENCAN736RBO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF554CLT|/files/ENCFF554CLT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF554CLT|/files/ENCFF554CLT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.52. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF044OBF|/files/ENCFF044OBF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF044OBF|/files/ENCFF044OBF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR007YOT | float |
Histone_ChIP-seq_ENCSR007YOT |
Histone_ChIP-seq ENCSR007YOT [biosample_summary="Homo sapiens GM23248" and target="H3K27ac"]
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[1.83, 69.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF439OYI.bed.gz | 2.05 MB | 775d2a9af66b3fab4eee40f3f4f27cf8 |
| ENCFF439OYI.bed.gz.dvc | 101.0 B | f87d5af1dcb60d4249f6b3a9075d6091 |
| ENCFF439OYI.tabix.bed.gz | 860.45 KB | 16ea586fe1af692e2e1fc7ac8732d255 |
| ENCFF439OYI.tabix.bed.gz.dvc | 106.0 B | 2c65726493bab78da7a3d2dfd374ac22 |
| ENCFF439OYI.tabix.bed.gz.tbi | 271.73 KB | 37bfa37c023ad5bc99b48e0888e00a6c |
| ENCFF439OYI.tabix.bed.gz.tbi.dvc | 110.0 B | ffa3eb45b294d430a7827fbb3b5c39fe |
| genomic_resource.yaml | 4.22 KB | 503886cfaea96f5d810a20f0f21964f1 |
| genomic_resource_original.yaml | 4.11 KB | 55b90a6c91063ca3b2da3bff5fba921c |
| statistics/ |