Resource

Id Histone_ChIP-seq/ENCSR007GEDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR007GED [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR007GED
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (54 years)
  • date_created: 2017-12-06T21:15:13.222984+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR007GED
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR007GED float

Histone_ChIP-seq_ENCSR007GED
Histone_ChIP-seq ENCSR007GED [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR007GED [1.49, 9.87]
n
85,103,588
mean
3.72
sd
1.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 851035882.65% 53541
chr1 8744714 3.51% 5277
chr1_KI270711v1_random 1085 2.57% 1
chr2 5873526 2.43% 4115
chr3 4840571 2.44% 3319
chr4 2843228 1.49% 2110
chr5 3968996 2.19% 2673
chr6 3500604 2.05% 2448
chr7 3853006 2.42% 2531
chr8 2675105 1.84% 1914
chr9 3789086 2.74% 2331
chr10 3628977 2.71% 2434
chr11 4687340 3.47% 2761
chr12 4906956 3.68% 2913
chr13 1408536 1.23% 1103
chr14 2972677 2.78% 1930
chr15 3139028 3.08% 2071
chr16 4438508 4.91% 2471
chr17 5549817 6.67% 3079
chr18 1168555 1.45% 878
chr19 6135211 10.47% 3085
chr20 2802524 4.35% 1652
chr21 1097149 2.35% 714
chr22 2605776 5.13% 1346
chrX 456255 0.29% 370
chrY 16358 0.03% 15
3341 contigs with no values (129034875 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53541 280 41557 1589.5 1102
global segment-length histogram

Files

Filename Size md5
ENCFF494MWW.bed.gz 1.16 MB 196b6457e99d731633c9df2669434085
ENCFF494MWW.tabix.bed.gz 567.08 KB 657ff81eceed9af48237b3c0226897d8
ENCFF494MWW.tabix.bed.gz.tbi 122.74 KB bd9198a8035402cdbe302deaa475af54
genomic_resource.yaml 1.49 KB 1c72a237630a7d474e47f1da4bf4db6f
statistics/