| Id: | Histone_ChIP-seq/ENCSR004AKD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR004AKD [biosamplesummary="Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (59 years) female adult female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN696MOA|/analyses/ENCAN696MOA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF208JXM|/files/ENCFF208JXM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF208JXM|/files/ENCFF208JXM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.35. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF600DDJ|/files/ENCFF600DDJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF600DDJ|/files/ENCFF600DDJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.66. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR004AKD | float |
Histone_ChIP-seq_ENCSR004AKD |
Histone_ChIP-seq ENCSR004AKD [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (41 years) and female adult (59 years), originated from adipose tissue" and target="H3K4me3"]
|
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[1.75, 76] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF166VPJ.bed.gz | 1.71 MB | d3d0db413410de8a6ddc42849312aed1 |
| ENCFF166VPJ.bed.gz.dvc | 101.0 B | ba7c7456520becb2538964bc9efc3f81 |
| ENCFF166VPJ.tabix.bed.gz | 747.97 KB | 079975815200e118755263ecb8f1d2bd |
| ENCFF166VPJ.tabix.bed.gz.dvc | 106.0 B | 3bb09a689b129e748d43a43d233fceed |
| ENCFF166VPJ.tabix.bed.gz.tbi | 288.22 KB | 13ddace9ac378b35ef32d9c023f88e66 |
| ENCFF166VPJ.tabix.bed.gz.tbi.dvc | 110.0 B | 0c0375c3df34d8a8282b9b88338450a4 |
| genomic_resource.yaml | 4.53 KB | c942741fe7ea53749bf6bb143d32d5c8 |
| genomic_resource_original.yaml | 4.32 KB | c73c2852438c3c57bf479463bf9f133a |
| statistics/ |