Resource

Id Histone_ChIP-seq/ENCSR003WKFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR003WKF [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR003WKF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004222/
  • biosample_summary: Homo sapiens stomach smooth muscle tissue female adult (84 years)
  • date_created: 2015-09-15T19:52:35.837402+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR003WKF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (84 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR003WKF float

Histone_ChIP-seq_ENCSR003WKF
Histone_ChIP-seq ENCSR003WKF [biosample_summary="Homo sapiens stomach smooth muscle tissue female adult (84 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR003WKF [1.76, 17.6]
n
12,319,415
mean
4.96
sd
1.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123194150.38% 32656
chr1 774709 0.31% 2108
chr2 713663 0.29% 2058
chr3 545696 0.28% 1563
chr4 535893 0.28% 1518
chr5 746266 0.41% 2015
chr6 487424 0.29% 1409
chr7 620902 0.39% 1619
chr8 647291 0.45% 1846
chr9 407810 0.29% 1064
chr10 562603 0.42% 1507
chr11 457353 0.34% 1288
chr12 633653 0.48% 1620
chr13 276089 0.24% 823
chr14 348589 0.33% 962
chr15 322349 0.32% 835
chr16 558223 0.62% 1443
chr17 275802 0.33% 715
chr18 232037 0.29% 676
chr19 1372934 2.34% 2573
chr20 344789 0.54% 923
chr21 196483 0.42% 538
chr22 170415 0.34% 452
chrX 1086182 0.70% 3093
chrY 2260 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32656 145 6735 377.25 316
global segment-length histogram

Files

Filename Size md5
ENCFF607YVF.bed.gz 595.67 KB 6422a7bcfe0c71ad709a0e093fad8de3
ENCFF607YVF.tabix.bed.gz 308.46 KB 756136f961cc189cf494cb6c9a75d14f
ENCFF607YVF.tabix.bed.gz.tbi 187.98 KB 6975a21c96262cfdeee3de7f5cded4d4
genomic_resource.yaml 1.54 KB 641082ec671f255f28441f7523c14f9d
statistics/