Histone_ChIP-seq_ENCSR002YRE
Histone_ChIP-seq ENCSR002YRE [biosample_summary="Homo sapiens IMR-90" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR002YRE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR002YRE [biosamplesummary="Homo sapiens IMR-90" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN781CQQ|/analyses/ENCAN781CQQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF071VOI|/files/ENCFF071VOI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8958790 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF146UYU|/files/ENCFF146UYU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR002YRE | float |
Histone_ChIP-seq_ENCSR002YRE |
Histone_ChIP-seq ENCSR002YRE [biosample_summary="Homo sapiens IMR-90" and target="H3K27ac"]
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[1.59, 41] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF730BVO.bed.gz | 2.91 MB | 568f9b5d553717209d81b8cd1faf8369 |
| ENCFF730BVO.bed.gz.dvc | 101.0 B | ded29e160ec8a63eb35df7411abe7bdc |
| ENCFF730BVO.tabix.bed.gz | 1.23 MB | 7c6293ffdb2ba9505b44a7de2a5d1c09 |
| ENCFF730BVO.tabix.bed.gz.dvc | 107.0 B | ea263ebe3250cccc63111f8769c30cfb |
| ENCFF730BVO.tabix.bed.gz.tbi | 273.83 KB | 58fed11f4e28443d566ceb981dad9b9b |
| ENCFF730BVO.tabix.bed.gz.tbi.dvc | 110.0 B | 1cd59fa79c9566dee2dcbf5ffff63370 |
| genomic_resource.yaml | 2.53 KB | bf8714a38a32ce98bab45e0ed105e891 |
| genomic_resource_original.yaml | 2.42 KB | 0ea0e932d46bb9adabbe3513ac4cc485 |
| statistics/ |