Resource
| Id | Histone_ChIP-seq/ENCSR001ZXO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR001ZXO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN368MWZ|/analyses/ENCAN368MWZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF534HLX|/files/ENCFF534HLX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF534HLX|/files/ENCFF534HLX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.11. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR001ZXO | float |
Histone_ChIP-seq_ENCSR001ZXO |
Histone_ChIP-seq ENCSR001ZXO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27me3"]
|
 |
[1.59, 15.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 95129933 | 2.96% | 102747 |
| chr1 | 10045376 | 4.03% | 10684 |
| chr2 | 7079501 | 2.92% | 8118 |
| chr3 | 3433305 | 1.73% | 4132 |
| chr4 | 3150489 | 1.66% | 3203 |
| chr5 | 4404589 | 2.43% | 4598 |
| chr6 | 5191522 | 3.04% | 5286 |
| chr7 | 4793977 | 3.01% | 5179 |
| chr8 | 4045080 | 2.79% | 4526 |
| chr9 | 3731051 | 2.70% | 4036 |
| chr10 | 5216891 | 3.90% | 5704 |
| chr11 | 4954923 | 3.67% | 5727 |
| chr12 | 4773849 | 3.58% | 5137 |
| chr13 | 2094590 | 1.83% | 2298 |
| chr14 | 3274468 | 3.06% | 3604 |
| chr15 | 2983588 | 2.93% | 3507 |
| chr16 | 3491017 | 3.86% | 3932 |
| chr17 | 5716133 | 6.87% | 5248 |
| chr18 | 1685393 | 2.10% | 2125 |
| chr19 | 5141175 | 8.77% | 5092 |
| chr20 | 4817792 | 7.48% | 5104 |
| chr21 | 1240784 | 2.66% | 1393 |
| chr22 | 3384932 | 6.66% | 3569 |
| chrX | 469055 | 0.30% | 529 |
| chrY | 10453 | 0.02% | 16 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102747 | 195 | 88159 | 925.87 | 601 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF129CKY.bed.gz | 1.76 MB | 0212cc2329d3b1321cd4824b7d985bdc |
| ENCFF129CKY.tabix.bed.gz | 939.6 KB | 72761df00aaf242da3e0928c8480e15a |
| ENCFF129CKY.tabix.bed.gz.tbi | 203.66 KB | 51fea46fce5685841e9295de9687db0a |
| genomic_resource.yaml | 2.8 KB | bd77dbaffdebe29884acc8c4a10fe9dd |
| statistics/ |