Histone_ChIP-seq_ENCSR001ZXO
Histone_ChIP-seq ENCSR001ZXO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27me3"]
×
| Id: | Histone_ChIP-seq/ENCSR001ZXO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR001ZXO [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN368MWZ|/analyses/ENCAN368MWZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF534HLX|/files/ENCFF534HLX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF534HLX|/files/ENCFF534HLX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.11. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR001ZXO | float |
Histone_ChIP-seq_ENCSR001ZXO |
Histone_ChIP-seq ENCSR001ZXO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (69 years)" and target="H3K27me3"]
|
|
[1.59, 15.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF129CKY.bed.gz | 1.76 MB | 0212cc2329d3b1321cd4824b7d985bdc |
| ENCFF129CKY.bed.gz.dvc | 101.0 B | b22d48f47f21225371244da86846a918 |
| ENCFF129CKY.tabix.bed.gz | 939.6 KB | 72761df00aaf242da3e0928c8480e15a |
| ENCFF129CKY.tabix.bed.gz.dvc | 106.0 B | 3ea4d9d0572f9c5efd7f9403bd711521 |
| ENCFF129CKY.tabix.bed.gz.tbi | 203.66 KB | 51fea46fce5685841e9295de9687db0a |
| ENCFF129CKY.tabix.bed.gz.tbi.dvc | 110.0 B | 018050f65a336e01b9a3a2ebf75cfb71 |
| genomic_resource.yaml | 2.8 KB | bd77dbaffdebe29884acc8c4a10fe9dd |
| genomic_resource_original.yaml | 2.65 KB | 6c71408992052b180a5c6cc2d892b7e6 |
| statistics/ |