Histone_ChIP-seq_ENCSR001UVQ
Histone_ChIP-seq ENCSR001UVQ [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR001UVQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR001UVQ [biosamplesummary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN433EEJ|/analyses/ENCAN433EEJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF678VJD|/files/ENCFF678VJD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 41193938 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF678VJD|/files/ENCFF678VJD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF678VJD|/files/ENCFF678VJD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR001UVQ | float |
Histone_ChIP-seq_ENCSR001UVQ |
Histone_ChIP-seq ENCSR001UVQ [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K36me3"]
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[1.58, 7.54] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF186VPP.bed.gz | 222.3 KB | eb89db615614bcfb34ac14e0f8d6a53b |
| ENCFF186VPP.bed.gz.dvc | 100.0 B | 38e732c3feceed3882e151ccaa95d4a0 |
| ENCFF186VPP.tabix.bed.gz | 120.5 KB | 1e2b24f57ad005bed63df8a32440026f |
| ENCFF186VPP.tabix.bed.gz.dvc | 106.0 B | fa6cf05aa9d89d51e82d96555b5c7416 |
| ENCFF186VPP.tabix.bed.gz.tbi | 65.89 KB | f925ccbe06792b0c9e1488e298386c29 |
| ENCFF186VPP.tabix.bed.gz.tbi.dvc | 109.0 B | 83eee80f492a4756e3997a84131bf9a9 |
| genomic_resource.yaml | 3.3 KB | 84fe46ff452d9fb8962691b19ee3bac9 |
| genomic_resource_original.yaml | 3.15 KB | 5480ac7643658a2e90fd6851bc59636d |
| statistics/ |