Histone_ChIP-seq_ENCSR001SHB
Histone_ChIP-seq ENCSR001SHB [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K27ac"]
×
| Id: | Histone_ChIP-seq/ENCSR001SHB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR001SHB [biosamplesummary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN214RHK|/analyses/ENCAN214RHK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF735KUK|/files/ENCFF735KUK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15333347 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF735KUK|/files/ENCFF735KUK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF735KUK|/files/ENCFF735KUK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.69. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR001SHB | float |
Histone_ChIP-seq_ENCSR001SHB |
Histone_ChIP-seq ENCSR001SHB [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K27ac"]
|
|
[1.77, 41.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF598JDA.bed.gz | 916.99 KB | ae1e164a720202f442f3713596a73c3e |
| ENCFF598JDA.bed.gz.dvc | 100.0 B | 2f9ac1996ea8634a66911d836267b913 |
| ENCFF598JDA.tabix.bed.gz | 414.49 KB | dec4a4b869970b7829385c7072c65802 |
| ENCFF598JDA.tabix.bed.gz.dvc | 106.0 B | e36e7fced9ac0382a5f521fbb0d90e9b |
| ENCFF598JDA.tabix.bed.gz.tbi | 160.7 KB | 1f0e5d7cda80e0f7beafbcee28b1b753 |
| ENCFF598JDA.tabix.bed.gz.tbi.dvc | 110.0 B | 3ae0c1909f9905bf2990e643be13a84d |
| genomic_resource.yaml | 3.22 KB | 4e5d010abb53ca203d242755260a981c |
| genomic_resource_original.yaml | 3.08 KB | 90dbf9527c189f8c2af874bd29f16928 |
| statistics/ |