Resource

Id Histone_ChIP-seq/ENCSR000SNMcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000SNM [biosample_summary="Homo sapiens tibial artery tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR000SNM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0007610/
  • biosample_summary: Homo sapiens tibial artery tissue female adult (51 years)
  • date_created: 2018-10-31T02:59:06.504570+00:00
  • date_released: 2018-12-11
  • doi: 10.17989/ENCSR000SNM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000SNM float

Histone_ChIP-seq_ENCSR000SNM
Histone_ChIP-seq ENCSR000SNM [biosample_summary="Homo sapiens tibial artery tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000SNM [1.66, 14]
n
116,770,919
mean
4.62
sd
1.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1167709193.63% 114146
chr1 12197682 4.90% 11195
chr2 9140980 3.77% 9212
chr3 8151300 4.11% 8245
chr4 4381153 2.30% 4870
chr5 5970572 3.29% 6290
chr6 5819591 3.41% 6378
chr7 5240398 3.29% 5380
chr8 4728654 3.26% 4946
chr9 5357460 3.87% 5001
chr10 6577230 4.92% 6429
chr11 6652326 4.92% 6026
chr12 5809928 4.36% 5778
chr13 2387630 2.09% 2589
chr14 3893740 3.64% 3715
chr15 4248124 4.17% 4053
chr16 4393833 4.86% 4066
chr17 6140915 7.38% 5300
chr18 2077117 2.58% 2177
chr19 4857046 8.29% 4090
chr20 3525649 5.47% 3239
chr21 1275037 2.73% 1303
chr22 2956989 5.82% 2541
chrX 987565 0.63% 1323
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114146 195 28160 1023 767
global segment-length histogram

Files

Filename Size md5
ENCFF690QIK.bed.gz 2.36 MB 22e036c1cba0379df291caf64f0f3ae2
ENCFF690QIK.tabix.bed.gz 1.15 MB 059aff22f5de747aef74fc00a451f6b9
ENCFF690QIK.tabix.bed.gz.tbi 306.12 KB 64c9113b9b484dd89e1b39aa9bb86272
genomic_resource.yaml 1.73 KB 7d678f6f7bc3a53ee18ff88a556ac938
statistics/