Resource

Id Histone_ChIP-seq/ENCSR000GGXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000GGX [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR000GGX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000540/
  • biosample_summary: Homo sapiens neuron originated from H9
  • date_created: 2015-09-15T19:48:39.069486+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR000GGX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000GGX float

Histone_ChIP-seq_ENCSR000GGX
Histone_ChIP-seq ENCSR000GGX [biosample_summary="Homo sapiens neuron originated from H9" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000GGX [1.52, 21.9]
n
20,593,180
mean
4.61
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 205931800.64% 59374
chr1 1448095 0.58% 4337
chr1_KI270712v1_random 440 0.25% 2
chr1_KI270713v1_random 263 0.65% 1
chr2 1679793 0.69% 5172
chr3 1064877 0.54% 3284
chr4 1006539 0.53% 3063
chr4_GL000008v2_random 945 0.45% 3
chr5 1282378 0.71% 3747
chr6 1033276 0.60% 3235
chr7 1212826 0.76% 3583
chr8 844155 0.58% 2485
chr9 789955 0.57% 2250
chr10 782939 0.59% 2461
chr11 731138 0.54% 2220
chr12 949093 0.71% 2818
chr13 624256 0.55% 1969
chr14 573129 0.54% 1788
chr15 570999 0.56% 1674
chr16 664755 0.74% 1834
chr16_KI270728v1_random 198 0.01% 1
chr17 680677 0.82% 1999
chr17_KI270729v1_random 2007 0.71% 7
chr17_KI270730v1_random 519 0.46% 2
chr18 506094 0.63% 1543
chr19 2801144 4.78% 5936
chr20 436141 0.68% 1265
chr21 275484 0.59% 839
chr22 323035 0.64% 940
chr22_KI270736v1_random 2965 1.63% 7
chrUn_GL000195v1 444 0.24% 2
chrUn_GL000216v2 2136 1.21% 7
chrUn_GL000224v1 344 0.19% 1
chrUn_KI270438v1 200 0.18% 1
chrUn_KI270442v1 1392 0.36% 5
chrUn_KI270519v1 211 0.15% 1
chrUn_KI270589v1 238 0.54% 1
chrUn_KI270590v1 234 4.99% 1
chrUn_KI270757v1 546 0.77% 2
chrX 298769 0.19% 887
chrY 551 <0.01% 1
3326 contigs with no values (124900220 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59374 120 8048 346.84 277
global segment-length histogram

Files

Filename Size md5
ENCFF158NWI.bed.gz 1.14 MB edce9213066160fc7cde03f9d2cfce6a
ENCFF158NWI.tabix.bed.gz 579.65 KB fa7009027f837ee5e1c5f54112b67c3b
ENCFF158NWI.tabix.bed.gz.tbi 246.4 KB 1cdf94fa0307984fd277a7af4dc51480
genomic_resource.yaml 1.48 KB 59e4a3ae1b3d6216c4154ff22af02a38
statistics/