Histone_ChIP-seq_ENCSR000FCV
Histone_ChIP-seq ENCSR000FCV [biosample_summary="Homo sapiens SK-N-SH" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR000FCV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000FCV [biosamplesummary="Homo sapiens SK-N-SH" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN863MBH|/analyses/ENCAN863MBH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF788SBY|/files/ENCFF788SBY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18139240 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF888YKS|/files/ENCFF888YKS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 30158432 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF788SBY|/files/ENCFF788SBY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF788SBY|/files/ENCFF788SBY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCV | float |
Histone_ChIP-seq_ENCSR000FCV |
Histone_ChIP-seq ENCSR000FCV [biosample_summary="Homo sapiens SK-N-SH" and target="H3K36me3"]
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[1.61, 16.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF611SDW.bed.gz | 2.98 MB | c18c9c61f88d21433d3bd7ab762b5104 |
| ENCFF611SDW.bed.gz.dvc | 101.0 B | 315613c0121f7d6a337cdaebd906272f |
| ENCFF611SDW.tabix.bed.gz | 1.42 MB | 679932cfc633b4c6ed2189126e95cffa |
| ENCFF611SDW.tabix.bed.gz.dvc | 107.0 B | f2573755447e002615a17f2a6865fece |
| ENCFF611SDW.tabix.bed.gz.tbi | 170.82 KB | 07b5f59c660ec194b84520ef794d95a8 |
| ENCFF611SDW.tabix.bed.gz.tbi.dvc | 110.0 B | 0c54cd32464bc51c3d22d14ccc6bc5a9 |
| genomic_resource.yaml | 3.74 KB | c2ad832a1a4b84e2fc57e30e6e7e378b |
| genomic_resource_original.yaml | 3.63 KB | b63a4d170985e3e25c1f58894d996500 |
| statistics/ |