Resource
| Id | Histone_ChIP-seq/ENCSR000FCR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCR [biosample_summary="Homo sapiens SK-N-SH" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN761IHM|/analyses/ENCAN761IHM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN761IHM|/analyses/ENCAN761IHM/} has in progress subobject document {2077d6da-7b63-43bd-a90d-9f23e52a2ecd|/documents/2077d6da-7b63-43bd-a90d-9f23e52a2ecd/} audit_not_compliant: Processed alignments file {ENCFF087SLF|/files/ENCFF087SLF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 32576810 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF632SCR|/files/ENCFF632SCR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 34264313 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCR | float |
Histone_ChIP-seq_ENCSR000FCR |
Histone_ChIP-seq ENCSR000FCR [biosample_summary="Homo sapiens SK-N-SH" and target="H3K4me1"]
|
 |
[1.61, 33.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99714160 | 3.10% | 163053 |
| chr1 | 10739780 | 4.31% | 17296 |
| chr2 | 9105906 | 3.76% | 15004 |
| chr3 | 6333698 | 3.19% | 10894 |
| chr4 | 3454961 | 1.82% | 6665 |
| chr5 | 5542799 | 3.05% | 9517 |
| chr6 | 4425623 | 2.59% | 8380 |
| chr7 | 6415810 | 4.03% | 10382 |
| chr8 | 4037661 | 2.78% | 7107 |
| chr9 | 4544434 | 3.28% | 7068 |
| chr10 | 5416859 | 4.05% | 8567 |
| chr11 | 6129683 | 4.54% | 9111 |
| chr12 | 4068937 | 3.05% | 6822 |
| chr13 | 2206846 | 1.93% | 4451 |
| chr14 | 3178297 | 2.97% | 4776 |
| chr15 | 3534962 | 3.47% | 5839 |
| chr16 | 3567193 | 3.95% | 5242 |
| chr17 | 5413088 | 6.50% | 7258 |
| chr18 | 2057598 | 2.56% | 3785 |
| chr19 | 2599276 | 4.43% | 3897 |
| chr20 | 2802333 | 4.35% | 4369 |
| chr21 | 894333 | 1.91% | 1498 |
| chr22 | 2299765 | 4.53% | 3196 |
| chrX | 944318 | 0.61% | 1929 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 163053 | 160 | 23462 | 611.54 | 413 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF606SMX.bed.gz | 3.49 MB | 099cb735b01fd3a81962b34e5b0220b6 |
| ENCFF606SMX.tabix.bed.gz | 1.62 MB | cdc9a7919e047628f3f9bdaa89d47384 |
| ENCFF606SMX.tabix.bed.gz.tbi | 389.3 KB | f84457f41b52905a66d897dfc9cfde47 |
| genomic_resource.yaml | 2.61 KB | 9d0cf4cbfa0f7320fde9fe99dbb435be |
| statistics/ |