Histone_ChIP-seq_ENCSR000FCL
Histone_ChIP-seq ENCSR000FCL [biosample_summary="Homo sapiens GM08714" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000FCL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000FCL [biosamplesummary="Homo sapiens GM08714" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN736YSU|/analyses/ENCAN736YSU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF494CGD|/files/ENCFF494CGD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF494CGD|/files/ENCFF494CGD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.30. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCL | float |
Histone_ChIP-seq_ENCSR000FCL |
Histone_ChIP-seq ENCSR000FCL [biosample_summary="Homo sapiens GM08714" and target="H3K4me3"]
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[1.55, 53] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF590XUH.bed.gz | 1020.76 KB | cdeeafe9862608781795c1ddcbac81cf |
| ENCFF590XUH.bed.gz.dvc | 101.0 B | eaad0d957603f03b8e3b0c1a68d02c59 |
| ENCFF590XUH.tabix.bed.gz | 426.33 KB | f90e02cb2e87758137e49edbfd9c593e |
| ENCFF590XUH.tabix.bed.gz.dvc | 106.0 B | c822bedb464683bf3c8f67f92841374c |
| ENCFF590XUH.tabix.bed.gz.tbi | 165.34 KB | 6e87e84169b563882b3bdfe20c8ef0a6 |
| ENCFF590XUH.tabix.bed.gz.tbi.dvc | 110.0 B | a04259f62407abf1acfa45602f3399c6 |
| genomic_resource.yaml | 2.67 KB | f80c3ca943405536a796e13c20b0ee71 |
| genomic_resource_original.yaml | 2.56 KB | 41f7d3b82efe395bf527f756eb2e461f |
| statistics/ |