Resource
| Id | Histone_ChIP-seq/ENCSR000FCJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000FCJ [biosample_summary="Homo sapiens HEK293" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN383BOS|/analyses/ENCAN383BOS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF086HYJ|/files/ENCFF086HYJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 33396424 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF072JON|/files/ENCFF072JON/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 37017832 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000FCJ | float |
Histone_ChIP-seq_ENCSR000FCJ |
Histone_ChIP-seq ENCSR000FCJ [biosample_summary="Homo sapiens HEK293" and target="H3K9me3"]
|
 |
[1.95, 9.57] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2729409 | 0.08% | 7970 |
| chr1 | 47131 | 0.02% | 173 |
| chr2 | 39254 | 0.02% | 151 |
| chr3 | 5831 | <0.01% | 22 |
| chr4 | 896 | <0.01% | 4 |
| chr4_GL000008v2_random | 868 | 0.41% | 2 |
| chr5 | 93394 | 0.05% | 365 |
| chr6 | 41872 | 0.02% | 161 |
| chr7 | 20467 | 0.01% | 82 |
| chr8 | 2112 | <0.01% | 8 |
| chr9 | 3782 | <0.01% | 18 |
| chr10 | 44626 | 0.03% | 163 |
| chr11 | 952 | <0.01% | 4 |
| chr12 | 32643 | 0.02% | 126 |
| chr13 | 1216 | <0.01% | 6 |
| chr14 | 42454 | 0.04% | 152 |
| chr14_GL000225v1_random | 183 | 0.09% | 1 |
| chr14_KI270722v1_random | 976 | 0.50% | 4 |
| chr15 | 58054 | 0.06% | 201 |
| chr16 | 5058 | 0.01% | 20 |
| chr17 | 65806 | 0.08% | 236 |
| chr17_GL000205v2_random | 646 | 0.35% | 2 |
| chr17_KI270729v1_random | 4514 | 1.61% | 8 |
| chr17_KI270730v1_random | 733 | 0.65% | 2 |
| chr18 | 27273 | 0.03% | 98 |
| chr19 | 1322052 | 2.26% | 3105 |
| chr20 | 12087 | 0.02% | 43 |
| chr21 | 48041 | 0.10% | 183 |
| chr22 | 22058 | 0.04% | 75 |
| chr22_KI270733v1_random | 301 | 0.17% | 1 |
| chr22_KI270735v1_random | 198 | 0.46% | 1 |
| chr22_KI270736v1_random | 3062 | 1.68% | 7 |
| chrUn_GL000216v2 | 1702 | 0.96% | 4 |
| chrUn_GL000219v1 | 247 | 0.14% | 1 |
| chrUn_KI270438v1 | 574 | 0.51% | 2 |
| chrUn_KI270442v1 | 2750 | 0.70% | 9 |
| chrUn_KI270590v1 | 233 | 4.97% | 1 |
| chrUn_KI270751v1 | 1067 | 0.71% | 2 |
| chrUn_KI270754v1 | 291 | 0.72% | 1 |
| chrX | 773134 | 0.50% | 2522 |
| chrY | 871 | <0.01% | 4 |
| 3326 contigs with no values (126422679 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 7970 | 170 | 4494 | 342.46 | 271 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF037SXA.bed.gz | 135.7 KB | b9fb582bbfcbe4f16eb4afaef64b64db |
| ENCFF037SXA.tabix.bed.gz | 73.94 KB | 111f358408ff5bf457d00a41f0112fdf |
| ENCFF037SXA.tabix.bed.gz.tbi | 40.46 KB | d3abeaffca595ca4be42e5571fa703af |
| genomic_resource.yaml | 2.37 KB | ee12392db930c60102372a25b4d6ce82 |
| statistics/ |