Histone_ChIP-seq_ENCSR000EXV
Histone_ChIP-seq ENCSR000EXV [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR000EXV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000EXV [biosamplesummary="Homo sapiens mononuclear cell male" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN388ZFW|/analyses/ENCAN388ZFW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN388ZFW|/analyses/ENCAN388ZFW/} has in progress subobject document {31cff06a-e7aa-402f-b8f1-d2cc97c36d4b|/documents/31cff06a-e7aa-402f-b8f1-d2cc97c36d4b/} audit_not_compliant: Processed alignments file {ENCFF424AKL|/files/ENCFF424AKL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 14768617 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF305NHF|/files/ENCFF305NHF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 30079072 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305NHF|/files/ENCFF305NHF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305NHF|/files/ENCFF305NHF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXV | float |
Histone_ChIP-seq_ENCSR000EXV |
Histone_ChIP-seq ENCSR000EXV [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K4me1"]
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[1.64, 31.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF767YTL.bed.gz | 2.96 MB | 047e3804acfba23e75be227c37b97501 |
| ENCFF767YTL.bed.gz.dvc | 101.0 B | 6a46081fe0d0fb352c6f54081f69c0c6 |
| ENCFF767YTL.tabix.bed.gz | 1.32 MB | c559b54644546670fcbddc174afd6b89 |
| ENCFF767YTL.tabix.bed.gz.dvc | 107.0 B | c25a79e1837231bd4ec9d3d059fb06fe |
| ENCFF767YTL.tabix.bed.gz.tbi | 273.22 KB | 0a1f5a52dc0975f8e6c4f5da7061a51a |
| ENCFF767YTL.tabix.bed.gz.tbi.dvc | 110.0 B | 620c066b1fec9d14942371d8d87aa591 |
| genomic_resource.yaml | 3.87 KB | 5ac829c94a284160d3974d86c2d137d2 |
| genomic_resource_original.yaml | 3.75 KB | d4811f77ce6b16828bf20bc825304cd5 |
| statistics/ |