Histone_ChIP-seq_ENCSR000EXU
Histone_ChIP-seq ENCSR000EXU [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR000EXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000EXU [biosamplesummary="Homo sapiens mononuclear cell male" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN269AUY|/analyses/ENCAN269AUY/} has in progress subobject document {2f73ceb6-bd9d-45b4-a38e-8f8c0112ca1f|/documents/2f73ceb6-bd9d-45b4-a38e-8f8c0112ca1f/} audit_internal_action: Released analysis {ENCAN269AUY|/analyses/ENCAN269AUY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF382MGX|/files/ENCFF382MGX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 43356495 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF186RNJ|/files/ENCFF186RNJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF186RNJ|/files/ENCFF186RNJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXU | float |
Histone_ChIP-seq_ENCSR000EXU |
Histone_ChIP-seq ENCSR000EXU [biosample_summary="Homo sapiens mononuclear cell male" and target="H3K9me3"]
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[1.52, 19.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF786QDJ.bed.gz | 671.71 KB | 8754ebfbfb17ad26971ba6f03123f980 |
| ENCFF786QDJ.bed.gz.dvc | 100.0 B | 7de9f76603d09a747f98cc67faa068f1 |
| ENCFF786QDJ.tabix.bed.gz | 334.73 KB | d77873712f6271a306193753666a864e |
| ENCFF786QDJ.tabix.bed.gz.dvc | 106.0 B | df3727df55e15c76e1c43daf83bee7ba |
| ENCFF786QDJ.tabix.bed.gz.tbi | 174.6 KB | 203b75217392405b80381f241f6ffb42 |
| ENCFF786QDJ.tabix.bed.gz.tbi.dvc | 110.0 B | c4aafd31eb4436ec601cdc02c790832f |
| genomic_resource.yaml | 3.38 KB | 0a0b3503765d50d55ab6d76297276b7f |
| genomic_resource_original.yaml | 3.26 KB | 454d7587a23f49b39629244fca7915e7 |
| statistics/ |