Histone_ChIP-seq_ENCSR000EXK
Histone_ChIP-seq ENCSR000EXK [biosample_summary="Homo sapiens Panc1" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR000EXK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000EXK [biosamplesummary="Homo sapiens Panc1" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN382NYS|/analyses/ENCAN382NYS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN382NYS|/analyses/ENCAN382NYS/} has in progress subobject document {ed77eba4-5eab-4d65-8349-b43ec026e34d|/documents/ed77eba4-5eab-4d65-8349-b43ec026e34d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF857ERK|/files/ENCFF857ERK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF857ERK|/files/ENCFF857ERK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXK | float |
Histone_ChIP-seq_ENCSR000EXK |
Histone_ChIP-seq ENCSR000EXK [biosample_summary="Homo sapiens Panc1" and target="H3K27ac"]
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[1.45, 46.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF079UIK.bed.gz | 1.75 MB | 94fe92382fb64df64e171156c1a5662d |
| ENCFF079UIK.bed.gz.dvc | 101.0 B | 61e23bb43f6e168832c860abe10f7ffe |
| ENCFF079UIK.tabix.bed.gz | 838.93 KB | 3f4aad9996d67f0b2404852c7c266513 |
| ENCFF079UIK.tabix.bed.gz.dvc | 106.0 B | 9e782fdb8bf172224d80530d4e5d3fef |
| ENCFF079UIK.tabix.bed.gz.tbi | 177.54 KB | 29c34acbe6581498a14a2304198295b9 |
| ENCFF079UIK.tabix.bed.gz.tbi.dvc | 110.0 B | bc4fa2156bb4cd43c550c607386f34dd |
| genomic_resource.yaml | 2.9 KB | c2480df67f45102ee5287303b5be2dad |
| genomic_resource_original.yaml | 2.8 KB | e638fc8dd6bcab722eb5ba7f1627431f |
| statistics/ |