Histone_ChIP-seq_ENCSR000EXE
Histone_ChIP-seq ENCSR000EXE [biosample_summary="Homo sapiens NT2/D1" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR000EXE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000EXE [biosamplesummary="Homo sapiens NT2/D1" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN618BKQ|/analyses/ENCAN618BKQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF193LZP|/files/ENCFF193LZP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16524523 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF750NEG|/files/ENCFF750NEG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14866935 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF193LZP|/files/ENCFF193LZP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF193LZP|/files/ENCFF193LZP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXE | float |
Histone_ChIP-seq_ENCSR000EXE |
Histone_ChIP-seq ENCSR000EXE [biosample_summary="Homo sapiens NT2/D1" and target="H3K27me3"]
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[1.6, 56.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF355TTQ.bed.gz | 973.65 KB | dabd0e7a0c848817b9e3d4ace613e7ec |
| ENCFF355TTQ.bed.gz.dvc | 100.0 B | ab8c1fc21d2573af3b78e54843f15af3 |
| ENCFF355TTQ.tabix.bed.gz | 451.36 KB | 33afce52924be4908262d12e34666deb |
| ENCFF355TTQ.tabix.bed.gz.dvc | 106.0 B | 06099701f8b50d355470de77f8dc87e1 |
| ENCFF355TTQ.tabix.bed.gz.tbi | 132.23 KB | 786c5dee632c1a8cbb024c8d1297ef98 |
| ENCFF355TTQ.tabix.bed.gz.tbi.dvc | 110.0 B | 7a96a6f5dfc80da0d8bfbc5f38378ac2 |
| genomic_resource.yaml | 3.67 KB | 7b55ae200c239e111f520528c8659e32 |
| genomic_resource_original.yaml | 3.56 KB | 0d1442a9105894bc1bb7c7edaccdfd97 |
| statistics/ |