Histone_ChIP-seq_ENCSR000EXB
Histone_ChIP-seq ENCSR000EXB [biosample_summary="Homo sapiens NT2/D1" and target="H3K36me3"]
×
| Id: | Histone_ChIP-seq/ENCSR000EXB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000EXB [biosamplesummary="Homo sapiens NT2/D1" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN882RJZ|/analyses/ENCAN882RJZ/} has in progress subobject document {daed34f1-b9fe-4e74-b0c4-0344ca9caa22|/documents/daed34f1-b9fe-4e74-b0c4-0344ca9caa22/} audit_internal_action: Released analysis {ENCAN882RJZ|/analyses/ENCAN882RJZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF138NTQ|/files/ENCFF138NTQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13399861 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF623IZX|/files/ENCFF623IZX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21107911 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF138NTQ|/files/ENCFF138NTQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF138NTQ|/files/ENCFF138NTQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.34. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXB | float |
Histone_ChIP-seq_ENCSR000EXB |
Histone_ChIP-seq ENCSR000EXB [biosample_summary="Homo sapiens NT2/D1" and target="H3K36me3"]
|
|
[1.65, 31.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF243SKO.bed.gz | 3.78 MB | 9e670231787695c0f0021ab6aa30d41d |
| ENCFF243SKO.bed.gz.dvc | 101.0 B | 83a4f72c45fcabf97eb2271b99da55f8 |
| ENCFF243SKO.tabix.bed.gz | 1.78 MB | 573f2dcc7b31a09dd6308c7b42a44846 |
| ENCFF243SKO.tabix.bed.gz.dvc | 107.0 B | 47c3fa23414c6508705c9d67c183a16f |
| ENCFF243SKO.tabix.bed.gz.tbi | 182.77 KB | d148d2332c085681a3ea978d124a461a |
| ENCFF243SKO.tabix.bed.gz.tbi.dvc | 110.0 B | 6c9cabea52e7450ed9637e92f239006a |
| genomic_resource.yaml | 3.93 KB | 94707d3830136e5f4c47c1802a89565e |
| genomic_resource_original.yaml | 3.82 KB | b897ef57d6ab52f5bad7ec57ab7b5207 |
| statistics/ |