Resource
| Id | Histone_ChIP-seq/ENCSR000EXA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EXA [biosample_summary="Homo sapiens NT2/D1" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN783VDM|/analyses/ENCAN783VDM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF921DJT|/files/ENCFF921DJT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14015227 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF425PUW|/files/ENCFF425PUW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14889901 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EXA | float |
Histone_ChIP-seq_ENCSR000EXA |
Histone_ChIP-seq ENCSR000EXA [biosample_summary="Homo sapiens NT2/D1" and target="H3K4me1"]
|
 |
[1.68, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46295435 | 1.44% | 133012 |
| chr1 | 6105373 | 2.45% | 15978 |
| chr2 | 3034890 | 1.25% | 9047 |
| chr3 | 2635943 | 1.33% | 7282 |
| chr4 | 1158469 | 0.61% | 3309 |
| chr5 | 1228008 | 0.68% | 4228 |
| chr6 | 1126102 | 0.66% | 4002 |
| chr7 | 1843458 | 1.16% | 5657 |
| chr8 | 1550506 | 1.07% | 4736 |
| chr9 | 2871153 | 2.07% | 7577 |
| chr10 | 1620820 | 1.21% | 5530 |
| chr11 | 3037270 | 2.25% | 8398 |
| chr12 | 2657553 | 1.99% | 7027 |
| chr13 | 389775 | 0.34% | 1397 |
| chr14 | 1029086 | 0.96% | 3431 |
| chr15 | 1729235 | 1.70% | 4855 |
| chr16 | 2962239 | 3.28% | 7928 |
| chr17 | 3512658 | 4.22% | 9514 |
| chr17_GL000205v2_random | 223 | 0.12% | 1 |
| chr18 | 486435 | 0.61% | 1716 |
| chr19 | 2534648 | 4.32% | 7355 |
| chr20 | 1899342 | 2.95% | 5307 |
| chr21 | 957050 | 2.05% | 2297 |
| chr22 | 1335286 | 2.63% | 4335 |
| chrUn_KI270442v1 | 754 | 0.19% | 1 |
| chrX | 588939 | 0.38% | 2103 |
| chrY | 220 | <0.01% | 1 |
| 3340 contigs with no values (128499433 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 133012 | 125 | 6465 | 348.05 | 286 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF630ZPK.bed.gz | 2.49 MB | e0372662b2048b4aeb9a80ec77744bcb |
| ENCFF630ZPK.tabix.bed.gz | 1.23 MB | 53b2b4c65c99ac9f2d2aa41ea4b1e565 |
| ENCFF630ZPK.tabix.bed.gz.tbi | 313.75 KB | cb3d4f040b5ff07dcaff647defdf0964 |
| genomic_resource.yaml | 2.37 KB | 7700e8d96fda5a9cb393979f75b52208 |
| statistics/ |