Histone_ChIP-seq_ENCSR000EWZ
Histone_ChIP-seq ENCSR000EWZ [biosample_summary="Homo sapiens NT2/D1" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR000EWZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000EWZ [biosamplesummary="Homo sapiens NT2/D1" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN806DXS|/analyses/ENCAN806DXS/} has in progress subobject document {a78e9e75-ece9-419f-9b5b-48535982e81e|/documents/a78e9e75-ece9-419f-9b5b-48535982e81e/} audit_internal_action: Released analysis {ENCAN806DXS|/analyses/ENCAN806DXS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF880VYO|/files/ENCFF880VYO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 30749371 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF951QES|/files/ENCFF951QES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF951QES|/files/ENCFF951QES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EWZ | float |
Histone_ChIP-seq_ENCSR000EWZ |
Histone_ChIP-seq ENCSR000EWZ [biosample_summary="Homo sapiens NT2/D1" and target="H3K9me3"]
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[1.59, 25.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF062IAJ.bed.gz | 1.44 MB | 54fd918054b460b26645c304439e5710 |
| ENCFF062IAJ.bed.gz.dvc | 101.0 B | b3247211ac64f863f4f742cf29cadec4 |
| ENCFF062IAJ.tabix.bed.gz | 702.41 KB | bd71b7713b3d99bc7e4b7bc622f1564f |
| ENCFF062IAJ.tabix.bed.gz.dvc | 106.0 B | 6c3abf3cf49bfc1741938d376a28a5df |
| ENCFF062IAJ.tabix.bed.gz.tbi | 314.31 KB | a09202a897fdbc313dbd4e77d69f41e6 |
| ENCFF062IAJ.tabix.bed.gz.tbi.dvc | 110.0 B | b464e5ea291434d3fae3def0048522b7 |
| genomic_resource.yaml | 3.42 KB | 6dc84e6e8c158fe58eb5fdd068d177b6 |
| genomic_resource_original.yaml | 3.31 KB | bcbf4fc4400c9de5f302a132e4d45ac6 |
| statistics/ |