Resource

Id Histone_ChIP-seq/ENCSR000EWRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000EWR [biosample_summary="Homo sapiens MCF-7" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR000EWR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001203/
  • biosample_summary: Homo sapiens MCF-7
  • date_created: 2013-12-12T07:13:40.702681+00:00
  • date_released: 2012-06-15
  • doi: 10.17989/ENCSR000EWR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000EWR float

Histone_ChIP-seq_ENCSR000EWR
Histone_ChIP-seq ENCSR000EWR [biosample_summary="Homo sapiens MCF-7" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000EWR [1.3, 31.6]
n
34,852,153
mean
5.33
sd
2.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 348521531.08% 59368
chr1 3324925 1.34% 5751
chr2 3035568 1.25% 4992
chr3 2240596 1.13% 3777
chr4 1205527 0.63% 2260
chr5 1709957 0.94% 2916
chr6 1928131 1.13% 3405
chr7 1689666 1.06% 3083
chr8 1686254 1.16% 2714
chr9 1590580 1.15% 2556
chr10 1937345 1.45% 3186
chr11 1609613 1.19% 2770
chr12 1913599 1.44% 3159
chr13 582487 0.51% 1021
chr14 1438984 1.34% 2341
chr15 1276044 1.25% 1989
chr16 1343858 1.49% 2260
chr17 1624585 1.95% 2758
chr18 396712 0.49% 730
chr19 1266062 2.16% 2463
chr20 1209499 1.88% 1933
chr21 605485 1.30% 905
chr22 597680 1.18% 1105
chrX 638996 0.41% 1294
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59368 195 19320 587.05 418
global segment-length histogram

Files

Filename Size md5
ENCFF223CXM.bed.gz 1.29 MB 8068a48f975708c9fbdf9a251af3a103
ENCFF223CXM.tabix.bed.gz 618.89 KB cf81a72005dd94942c697dafb8594523
ENCFF223CXM.tabix.bed.gz.tbi 176.08 KB 9d682271fa20181d5acf49839c4bc1f6
genomic_resource.yaml 1.36 KB 46314bee68e9fbf4544aba54d3bc1809
statistics/