Resource
| Id | Histone_ChIP-seq/ENCSR000EWQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EWQ [biosample_summary="Homo sapiens MCF-7" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN717CPA|/analyses/ENCAN717CPA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF317MIX|/files/ENCFF317MIX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 24359187 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF253QQB|/files/ENCFF253QQB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 30108405 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EWQ | float |
Histone_ChIP-seq_ENCSR000EWQ |
Histone_ChIP-seq ENCSR000EWQ [biosample_summary="Homo sapiens MCF-7" and target="H3K9me3"]
|
 |
[1.3, 18.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19728402 | 0.61% | 45995 |
| chr1 | 1015460 | 0.41% | 2389 |
| chr2 | 1074109 | 0.44% | 2790 |
| chr3 | 1293811 | 0.65% | 3396 |
| chr4 | 612557 | 0.32% | 1627 |
| chr5 | 1123687 | 0.62% | 2717 |
| chr6 | 838596 | 0.49% | 2202 |
| chr7 | 1495843 | 0.94% | 3627 |
| chr8 | 1038785 | 0.72% | 2458 |
| chr9 | 665107 | 0.48% | 1532 |
| chr10 | 761286 | 0.57% | 1761 |
| chr11 | 502997 | 0.37% | 1197 |
| chr12 | 928882 | 0.70% | 2151 |
| chr13 | 200084 | 0.17% | 549 |
| chr14 | 856493 | 0.80% | 2271 |
| chr15 | 514531 | 0.50% | 1197 |
| chr16 | 669657 | 0.74% | 1292 |
| chr17 | 767049 | 0.92% | 1821 |
| chr18 | 148030 | 0.18% | 400 |
| chr19 | 3859660 | 6.58% | 7554 |
| chr20 | 476265 | 0.74% | 974 |
| chr21 | 351829 | 0.75% | 578 |
| chr22 | 46250 | 0.09% | 131 |
| chrX | 441643 | 0.28% | 1304 |
| chrY | 45791 | 0.08% | 77 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 45995 | 175 | 40271 | 428.92 | 311 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF485JZY.bed.gz | 832.09 KB | 22ac5b4c7dd8630c12f8628869c5d403 |
| ENCFF485JZY.tabix.bed.gz | 428.4 KB | 7e3a383161398ef8320cbbf32b6706b3 |
| ENCFF485JZY.tabix.bed.gz.tbi | 168.5 KB | 909e4e82c6d5b5f93b26ec759b4634fe |
| genomic_resource.yaml | 2.36 KB | d404028d809592194839cbabbbce7a12 |
| statistics/ |