Resource
| Id | Histone_ChIP-seq/ENCSR000EWO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EWO [biosample_summary="Homo sapiens MCF-7" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN654GWX|/analyses/ENCAN654GWX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF791EGF|/files/ENCFF791EGF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 25299109 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF249DSI|/files/ENCFF249DSI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22816456 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EWO | float |
Histone_ChIP-seq_ENCSR000EWO |
Histone_ChIP-seq ENCSR000EWO [biosample_summary="Homo sapiens MCF-7" and target="H3K36me3"]
|
 |
[1.33, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 63132625 | 1.96% | 133834 |
| chr1 | 5659858 | 2.27% | 12248 |
| chr2 | 4545501 | 1.88% | 10440 |
| chr3 | 4258317 | 2.15% | 9006 |
| chr4 | 1542654 | 0.81% | 3958 |
| chr5 | 3262809 | 1.80% | 7036 |
| chr6 | 3533975 | 2.07% | 7683 |
| chr7 | 3634699 | 2.28% | 7213 |
| chr8 | 2121117 | 1.46% | 4751 |
| chr9 | 2928631 | 2.12% | 6049 |
| chr10 | 2639674 | 1.97% | 6035 |
| chr11 | 2917542 | 2.16% | 5638 |
| chr12 | 3202612 | 2.40% | 7030 |
| chr13 | 747040 | 0.65% | 1949 |
| chr14 | 3283009 | 3.07% | 6485 |
| chr15 | 2642823 | 2.59% | 5327 |
| chr16 | 3082915 | 3.41% | 6210 |
| chr17 | 4843564 | 5.82% | 8624 |
| chr18 | 573307 | 0.71% | 1533 |
| chr19 | 2490856 | 4.25% | 5497 |
| chr20 | 2175061 | 3.38% | 3981 |
| chr21 | 1105514 | 2.37% | 2148 |
| chr22 | 901151 | 1.77% | 2301 |
| chrX | 1039722 | 0.67% | 2691 |
| chrY | 274 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 133834 | 145 | 19236 | 471.72 | 335 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF783EAZ.bed.gz | 2.55 MB | dd6e932a9bd42b2483478eff0a572aac |
| ENCFF783EAZ.tabix.bed.gz | 1.26 MB | bfe91def99392053ef6e98a572eacfe3 |
| ENCFF783EAZ.tabix.bed.gz.tbi | 152.86 KB | 94e0f326ec2b8284beec3a875c915464 |
| genomic_resource.yaml | 2.43 KB | 4b942c68061982581c4fcfad33c95cd2 |
| statistics/ |