Resource
| Id | Histone_ChIP-seq/ENCSR000EVZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EVZ [biosample_summary="Homo sapiens K562" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN005MYG|/analyses/ENCAN005MYG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF204DNG|/files/ENCFF204DNG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12295093 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EVZ | float |
Histone_ChIP-seq_ENCSR000EVZ |
Histone_ChIP-seq ENCSR000EVZ [biosample_summary="Homo sapiens K562" and target="H3K9ac"]
|
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[1.65, 71.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 65372333 | 2.03% | 135749 |
| chr1 | 7373643 | 2.96% | 15512 |
| chr2 | 3621858 | 1.50% | 8004 |
| chr3 | 3191519 | 1.61% | 6774 |
| chr4 | 1540225 | 0.81% | 3127 |
| chr5 | 2337593 | 1.29% | 4935 |
| chr6 | 3298805 | 1.93% | 6932 |
| chr7 | 3457318 | 2.17% | 7618 |
| chr8 | 2136489 | 1.47% | 4463 |
| chr9 | 3151855 | 2.28% | 6478 |
| chr10 | 2496198 | 1.87% | 5348 |
| chr11 | 4214541 | 3.12% | 8452 |
| chr12 | 2943960 | 2.21% | 6106 |
| chr13 | 575852 | 0.50% | 1203 |
| chr14 | 1563162 | 1.46% | 3252 |
| chr15 | 1908723 | 1.87% | 4167 |
| chr16 | 3971738 | 4.40% | 7991 |
| chr17 | 4751060 | 5.71% | 9617 |
| chr18 | 562335 | 0.70% | 1254 |
| chr19 | 5797049 | 9.89% | 11032 |
| chr20 | 2080063 | 3.23% | 4603 |
| chr21 | 825724 | 1.77% | 1953 |
| chr22 | 2388158 | 4.70% | 4772 |
| chrX | 1183833 | 0.76% | 2154 |
| chrY | 632 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 135749 | 155 | 13521 | 481.57 | 313 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF085JHT.bed.gz | 2.97 MB | 5b5a4a7be89d9cb361338ca4d67a5806 |
| ENCFF085JHT.tabix.bed.gz | 1.35 MB | 1934d7892dc47fa71cec5228b826bf10 |
| ENCFF085JHT.tabix.bed.gz.tbi | 257.03 KB | 22d35ea5249180b5a4ed6b50554e364a |
| genomic_resource.yaml | 1.85 KB | 96c0a6fa373c8b1454cbee2ca48c36ba |
| statistics/ |
