Resource
| Id | Histone_ChIP-seq/ENCSR000EUS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000EUS [biosample_summary="Homo sapiens HCT116" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN271KWQ|/analyses/ENCAN271KWQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF415OTY|/files/ENCFF415OTY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 23317923 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF115MLX|/files/ENCFF115MLX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22995529 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000EUS | float |
Histone_ChIP-seq_ENCSR000EUS |
Histone_ChIP-seq ENCSR000EUS [biosample_summary="Homo sapiens HCT116" and target="H3K4me1"]
|
 |
[1.65, 16.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59312921 | 1.84% | 82702 |
| chr1 | 5671421 | 2.28% | 7930 |
| chr2 | 4226990 | 1.75% | 5810 |
| chr3 | 3459469 | 1.74% | 4844 |
| chr4 | 2732550 | 1.44% | 3743 |
| chr5 | 2673341 | 1.47% | 3885 |
| chr6 | 3368378 | 1.97% | 4866 |
| chr7 | 2813065 | 1.77% | 4039 |
| chr8 | 2787214 | 1.92% | 3477 |
| chr9 | 2361060 | 1.71% | 3331 |
| chr10 | 3273543 | 2.45% | 4247 |
| chr11 | 2995906 | 2.22% | 4025 |
| chr12 | 3509421 | 2.63% | 4763 |
| chr13 | 1154513 | 1.01% | 1680 |
| chr14 | 2048570 | 1.91% | 2851 |
| chr15 | 1839428 | 1.80% | 2618 |
| chr16 | 2186647 | 2.42% | 3139 |
| chr17 | 3705422 | 4.45% | 4800 |
| chr18 | 1109561 | 1.38% | 1534 |
| chr19 | 2450239 | 4.18% | 3925 |
| chr20 | 1835850 | 2.85% | 2459 |
| chr21 | 659833 | 1.41% | 946 |
| chr22 | 1519516 | 2.99% | 2057 |
| chrX | 929122 | 0.60% | 1726 |
| chrY | 1862 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82702 | 195 | 11520 | 717.19 | 521 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF214SYH.bed.gz | 1.82 MB | 19bcc23f6ad2fea82b387563f1df7e11 |
| ENCFF214SYH.tabix.bed.gz | 865.94 KB | 3c122fddaa152a77c0d984de94ba76a1 |
| ENCFF214SYH.tabix.bed.gz.tbi | 249.54 KB | ec01f1092f08e2866fe64df8d99eea82 |
| genomic_resource.yaml | 2.37 KB | 4b52c6413539ec287a9dbf3a6d92f04f |
| statistics/ |