Histone_ChIP-seq_ENCSR000DXZ
Histone_ChIP-seq ENCSR000DXZ [biosample_summary="Homo sapiens WI38" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DXZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DXZ [biosamplesummary="Homo sapiens WI38" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN005BDH|/analyses/ENCAN005BDH/} has in progress subobject document {221e49d9-2be2-46c8-9e55-2b2f53ad8186|/documents/221e49d9-2be2-46c8-9e55-2b2f53ad8186/} audit_internal_action: Released analysis {ENCAN005BDH|/analyses/ENCAN005BDH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF678NRT|/files/ENCFF678NRT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12855195 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF864WBR|/files/ENCFF864WBR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13309353 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF678NRT|/files/ENCFF678NRT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF678NRT|/files/ENCFF678NRT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF864WBR|/files/ENCFF864WBR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF864WBR|/files/ENCFF864WBR/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DXZ | float |
Histone_ChIP-seq_ENCSR000DXZ |
Histone_ChIP-seq ENCSR000DXZ [biosample_summary="Homo sapiens WI38" and target="H3K4me3"]
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[2.01, 130] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF033PCY.bed.gz | 789.76 KB | 99963c3ceb38f67a8f8c225efa8cfb7a |
| ENCFF033PCY.bed.gz.dvc | 100.0 B | e766ae7a46ef3a98e00cc4b0f7826442 |
| ENCFF033PCY.tabix.bed.gz | 355.92 KB | f87c00c5cc830021380bdcac91273ec5 |
| ENCFF033PCY.tabix.bed.gz.dvc | 106.0 B | 32db373dfae253919e8062c8cedca80e |
| ENCFF033PCY.tabix.bed.gz.tbi | 179.34 KB | 055ba4c7dad5e4f9a11ee88439d7727b |
| ENCFF033PCY.tabix.bed.gz.tbi.dvc | 110.0 B | 812433c6dd9709407a1350d9fdd725e0 |
| genomic_resource.yaml | 5.42 KB | a85718582ca81e10b0f5c382dc636d39 |
| genomic_resource_original.yaml | 5.32 KB | 2e222ef31547673a8a6cb497c06e5f5d |
| statistics/ |