Histone_ChIP-seq_ENCSR000DXL
Histone_ChIP-seq ENCSR000DXL [biosample_summary="Homo sapiens SK-N-MC" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DXL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DXL [biosamplesummary="Homo sapiens SK-N-MC" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN148TXW|/analyses/ENCAN148TXW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF460OFO|/files/ENCFF460OFO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10848854 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF693SZI|/files/ENCFF693SZI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11242897 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF693SZI|/files/ENCFF693SZI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF693SZI|/files/ENCFF693SZI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DXL | float |
Histone_ChIP-seq_ENCSR000DXL |
Histone_ChIP-seq ENCSR000DXL [biosample_summary="Homo sapiens SK-N-MC" and target="H3K4me3"]
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[2.01, 149] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF982ERU.bed.gz | 601.81 KB | 1d7a4fcc0ea6435544cd28ac7b8c498c |
| ENCFF982ERU.bed.gz.dvc | 100.0 B | edfe7d07ad406ac807b61e0b55395934 |
| ENCFF982ERU.tabix.bed.gz | 264.89 KB | 0ab54ba9ea6da1876041ba5b5cf1583c |
| ENCFF982ERU.tabix.bed.gz.dvc | 106.0 B | 883831d4cc54c16f0acb1a0418009bba |
| ENCFF982ERU.tabix.bed.gz.tbi | 139.61 KB | 4d9e147923415c9ec14dec82a99369a5 |
| ENCFF982ERU.tabix.bed.gz.tbi.dvc | 110.0 B | f6dd789577d403d2a1c66426669ddc64 |
| genomic_resource.yaml | 3.95 KB | 9d172cf6d233e412a742fbe7dbf472f6 |
| genomic_resource_original.yaml | 3.84 KB | 19c4eb068a4d4e3666cea4ca381daaf3 |
| statistics/ |