Resource
| Id | Histone_ChIP-seq/ENCSR000DXK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DXK [biosample_summary="Homo sapiens bronchial epithelial cell" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN821XLN|/analyses/ENCAN821XLN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN821XLN|/analyses/ENCAN821XLN/} has in progress subobject document {5cb7183b-9d3f-4f1c-9080-05034a5fce0b|/documents/5cb7183b-9d3f-4f1c-9080-05034a5fce0b/} audit_not_compliant: Processed alignments file {ENCFF024IIP|/files/ENCFF024IIP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12215369 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF179MTQ|/files/ENCFF179MTQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13267302 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DXK | float |
Histone_ChIP-seq_ENCSR000DXK |
Histone_ChIP-seq ENCSR000DXK [biosample_summary="Homo sapiens bronchial epithelial cell" and target="H3K27me3"]
|
 |
[1.96, 15.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14615138 | 0.45% | 43890 |
| chr1 | 1425961 | 0.57% | 4474 |
| chr2 | 1156653 | 0.48% | 3388 |
| chr3 | 810156 | 0.41% | 2645 |
| chr4 | 580798 | 0.31% | 1583 |
| chr5 | 740053 | 0.41% | 2290 |
| chr6 | 817641 | 0.48% | 2455 |
| chr7 | 810069 | 0.51% | 2236 |
| chr8 | 572560 | 0.39% | 1765 |
| chr9 | 760947 | 0.55% | 2324 |
| chr10 | 855210 | 0.64% | 2447 |
| chr11 | 860117 | 0.64% | 2675 |
| chr12 | 695541 | 0.52% | 1989 |
| chr13 | 324079 | 0.28% | 924 |
| chr14 | 430348 | 0.40% | 1403 |
| chr15 | 627049 | 0.61% | 1856 |
| chr16 | 361525 | 0.40% | 1125 |
| chr17 | 965860 | 1.16% | 2638 |
| chr18 | 220612 | 0.27% | 695 |
| chr19 | 397651 | 0.68% | 1148 |
| chr20 | 625065 | 0.97% | 1915 |
| chr21 | 147391 | 0.32% | 460 |
| chr22 | 310194 | 0.61% | 1040 |
| chrX | 118956 | 0.08% | 412 |
| chrY | 702 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43890 | 138 | 5837 | 332.99 | 235 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF495KNO.bed.gz | 787.14 KB | e2810fe7d18f1f6c7176260b00f25a8e |
| ENCFF495KNO.tabix.bed.gz | 416.78 KB | f16f80958d11dbe79d170b4ca75e150c |
| ENCFF495KNO.tabix.bed.gz.tbi | 141.86 KB | 771ac9bd1da369e51e79630191af3467 |
| genomic_resource.yaml | 2.97 KB | 0368781b576dd99c94ad996ee9e0b1a4 |
| statistics/ |