Resource
| Id | Histone_ChIP-seq/ENCSR000DXH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DXH [biosample_summary="Homo sapiens bronchial epithelial cell" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN601FZC|/analyses/ENCAN601FZC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF099GGM|/files/ENCFF099GGM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12254788 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF711LMX|/files/ENCFF711LMX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12556586 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DXH | float |
Histone_ChIP-seq_ENCSR000DXH |
Histone_ChIP-seq ENCSR000DXH [biosample_summary="Homo sapiens bronchial epithelial cell" and target="H3K36me3"]
|
 |
[1.88, 13.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31842297 | 0.99% | 132364 |
| chr1 | 3304477 | 1.33% | 13659 |
| chr2 | 2023095 | 0.84% | 9147 |
| chr3 | 1730500 | 0.87% | 7298 |
| chr4 | 1012219 | 0.53% | 4626 |
| chr5 | 1304536 | 0.72% | 5756 |
| chr6 | 1290542 | 0.76% | 5659 |
| chr7 | 1402435 | 0.88% | 6048 |
| chr8 | 1060479 | 0.73% | 4615 |
| chr9 | 1543048 | 1.11% | 6237 |
| chr10 | 1301747 | 0.97% | 5606 |
| chr11 | 1794094 | 1.33% | 7042 |
| chr12 | 1606189 | 1.21% | 6767 |
| chr13 | 421372 | 0.37% | 2012 |
| chr14 | 1039173 | 0.97% | 4477 |
| chr15 | 974545 | 0.96% | 4300 |
| chr16 | 1794846 | 1.99% | 7023 |
| chr17 | 2282879 | 2.74% | 8869 |
| chr18 | 481967 | 0.60% | 2275 |
| chr19 | 2315576 | 3.95% | 8451 |
| chr20 | 1175526 | 1.82% | 4601 |
| chr21 | 442311 | 0.95% | 1765 |
| chr22 | 1269128 | 2.50% | 4744 |
| chrX | 262951 | 0.17% | 1340 |
| chrY | 8662 | 0.02% | 47 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 132364 | 105 | 4798 | 240.57 | 185 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF761GQJ.bed.gz | 2.3 MB | 029043ac533fc033db4aac5abd77fbbb |
| ENCFF761GQJ.tabix.bed.gz | 1.2 MB | 23353a6faca43adaa5ab55010abaf161 |
| ENCFF761GQJ.tabix.bed.gz.tbi | 190.98 KB | eee120de294b7a47a1f74875107fc1cc |
| genomic_resource.yaml | 2.73 KB | 039d9073b2ed23ccf8d5c8511acaf729 |
| statistics/ |