Histone_ChIP-seq_ENCSR000DWW
Histone_ChIP-seq ENCSR000DWW [biosample_summary="Homo sapiens keratinocyte female" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DWW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DWW [biosamplesummary="Homo sapiens keratinocyte female" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN354SXS|/analyses/ENCAN354SXS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF418GTR|/files/ENCFF418GTR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10909346 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF352EMC|/files/ENCFF352EMC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10848734 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF418GTR|/files/ENCFF418GTR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF418GTR|/files/ENCFF418GTR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DWW | float |
Histone_ChIP-seq_ENCSR000DWW |
Histone_ChIP-seq ENCSR000DWW [biosample_summary="Homo sapiens keratinocyte female" and target="H3K36me3"]
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[1.87, 13] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF270RNZ.bed.gz | 2.78 MB | 80813560e2dd7fa7494bdf723a27c8f4 |
| ENCFF270RNZ.bed.gz.dvc | 101.0 B | dc1581c50faff24987fa96694c2d837a |
| ENCFF270RNZ.tabix.bed.gz | 1.45 MB | f16aea3703a53f7b76678395728e85b0 |
| ENCFF270RNZ.tabix.bed.gz.dvc | 107.0 B | 98e4cc846f7ad865917e606a66ba7753 |
| ENCFF270RNZ.tabix.bed.gz.tbi | 208.48 KB | 4bbc1f2eb5177192c641fcc8ef5e965d |
| ENCFF270RNZ.tabix.bed.gz.tbi.dvc | 110.0 B | 52fd3d79e5a09dc4e77695f156b891f4 |
| genomic_resource.yaml | 3.93 KB | 4473d9a190d8fdf0646cb81df3a9b20f |
| genomic_resource_original.yaml | 3.81 KB | 122d9f8d515adfa9acabec92a4593e56 |
| statistics/ |