Histone_ChIP-seq_ENCSR000DWS
Histone_ChIP-seq ENCSR000DWS [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DWS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DWS [biosamplesummary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN051HKH|/analyses/ENCAN051HKH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF153HAO|/files/ENCFF153HAO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF153HAO|/files/ENCFF153HAO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.03. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF224YBG|/files/ENCFF224YBG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF224YBG|/files/ENCFF224YBG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DWS | float |
Histone_ChIP-seq_ENCSR000DWS |
Histone_ChIP-seq ENCSR000DWS [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me3"]
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[1.88, 110] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF111YIF.bed.gz | 981.68 KB | 31ec7fd8f57f4d50fb0d2ad02b92bd9c |
| ENCFF111YIF.bed.gz.dvc | 101.0 B | 6e3b58627d22b45a492b9d4c120a113a |
| ENCFF111YIF.tabix.bed.gz | 431.73 KB | f2bcd7d22eb34302fd985e027e8d033f |
| ENCFF111YIF.tabix.bed.gz.dvc | 106.0 B | a894a628fc01ee954549e632e7b30df8 |
| ENCFF111YIF.tabix.bed.gz.tbi | 185.36 KB | 11b66f09753f3f04675694115b6b4feb |
| ENCFF111YIF.tabix.bed.gz.tbi.dvc | 110.0 B | a0a6d4219b1e795ca21f92365e8363d3 |
| genomic_resource.yaml | 4.26 KB | c289b219de44b932a34d0d246430a85f |
| genomic_resource_original.yaml | 4.13 KB | e0d2633566f8c1263cfff7f7f1d32171 |
| statistics/ |