Histone_ChIP-seq_ENCSR000DWL
Histone_ChIP-seq ENCSR000DWL [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DWL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DWL [biosamplesummary="Homo sapiens CD14-positive monocyte female" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN884RLB|/analyses/ENCAN884RLB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF764OBU|/files/ENCFF764OBU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16347826 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF764OBU|/files/ENCFF764OBU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF764OBU|/files/ENCFF764OBU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DWL | float |
Histone_ChIP-seq_ENCSR000DWL |
Histone_ChIP-seq ENCSR000DWL [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K4me3"]
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[1.69, 110] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF755NQZ.bed.gz | 739.83 KB | 08f7a20517d225527b476c5be188ad61 |
| ENCFF755NQZ.bed.gz.dvc | 100.0 B | 635a3f46063153187fe8e98ad3f6237a |
| ENCFF755NQZ.tabix.bed.gz | 312.06 KB | 285c93a64703c2ff7f36c519f9996267 |
| ENCFF755NQZ.tabix.bed.gz.dvc | 106.0 B | cd5b2836b7955a09ab94653549b59b3e |
| ENCFF755NQZ.tabix.bed.gz.tbi | 153.46 KB | 663fcbd9e4f6420b0cf4c89a1d9b0e47 |
| ENCFF755NQZ.tabix.bed.gz.tbi.dvc | 110.0 B | ce5b333bd1417dcb330b610e27e9e59d |
| genomic_resource.yaml | 3.17 KB | a7ce83fdd79349f775133f08781ac314 |
| genomic_resource_original.yaml | 3.04 KB | 237e45a3ceb362d2254159ab7a0519dc |
| statistics/ |