Histone_ChIP-seq_ENCSR000DWJ
Histone_ChIP-seq ENCSR000DWJ [biosample_summary="Homo sapiens MCF-7" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DWJ [biosamplesummary="Homo sapiens MCF-7" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN438KUU|/analyses/ENCAN438KUU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF222XKD|/files/ENCFF222XKD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF222XKD|/files/ENCFF222XKD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.10. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF091CNO|/files/ENCFF091CNO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DWJ | float |
Histone_ChIP-seq_ENCSR000DWJ |
Histone_ChIP-seq ENCSR000DWJ [biosample_summary="Homo sapiens MCF-7" and target="H3K4me3"]
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[1.35, 103] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF874SPN.bed.gz | 1.01 MB | f5ec62bac19f34f141cd43a09cb75bef |
| ENCFF874SPN.bed.gz.dvc | 101.0 B | f5d752d9832401a746b5f9c648883970 |
| ENCFF874SPN.tabix.bed.gz | 466.68 KB | 2309b681a62868ffe0082c74938af279 |
| ENCFF874SPN.tabix.bed.gz.dvc | 106.0 B | 3ac379d2057f6189ab4891e31f2e42d8 |
| ENCFF874SPN.tabix.bed.gz.tbi | 206.33 KB | b1e0166ddc2494c1da5578972e8c3d9d |
| ENCFF874SPN.tabix.bed.gz.tbi.dvc | 110.0 B | 4c600a7e184095bf4f2537fdc3c1fa61 |
| genomic_resource.yaml | 3.53 KB | db586f7500e917bccad74927bf47230e |
| genomic_resource_original.yaml | 3.42 KB | 12be2dc6ebd602a20b843c8fc3dcf6bf |
| statistics/ |