Histone_ChIP-seq_ENCSR000DWB
Histone_ChIP-seq ENCSR000DWB [biosample_summary="Homo sapiens K562" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DWB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DWB [biosamplesummary="Homo sapiens K562" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN334RBS|/analyses/ENCAN334RBS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN334RBS|/analyses/ENCAN334RBS/} has in progress subobject document {b85153ed-aa7e-4816-ab2a-49a89b5118b5|/documents/b85153ed-aa7e-4816-ab2a-49a89b5118b5/} audit_not_compliant: Processed alignments file {ENCFF816ECC|/files/ENCFF816ECC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12155869 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF035SOZ|/files/ENCFF035SOZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13760542 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF816ECC|/files/ENCFF816ECC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF816ECC|/files/ENCFF816ECC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.30. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DWB | float |
Histone_ChIP-seq_ENCSR000DWB |
Histone_ChIP-seq ENCSR000DWB [biosample_summary="Homo sapiens K562" and target="H3K36me3"]
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[1.63, 11.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF561OUZ.bed.gz | 1.31 MB | 7974e4f7e3f7b1db43715efdf2532916 |
| ENCFF561OUZ.bed.gz.dvc | 101.0 B | 08524654fc5a82531ba1c375183c11ca |
| ENCFF561OUZ.tabix.bed.gz | 701.2 KB | 61fa7723ffc0268c17ccea85c3a94b07 |
| ENCFF561OUZ.tabix.bed.gz.dvc | 106.0 B | f8c86362fd13e7799e8b4001eee0b8e5 |
| ENCFF561OUZ.tabix.bed.gz.tbi | 142.92 KB | cf463f6445201dbcdd81c2a4260c38b0 |
| ENCFF561OUZ.tabix.bed.gz.tbi.dvc | 110.0 B | 9a1e080ccb2d7bf1565fb5d58f83ae91 |
| genomic_resource.yaml | 4.22 KB | f69b0763159b8285c8b46dda35f4eb10 |
| genomic_resource_original.yaml | 4.11 KB | ed857108d312de64861f1eefec68d8de |
| statistics/ |