Resource
| Id | Histone_ChIP-seq/ENCSR000DVO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DVO [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN710RBS|/analyses/ENCAN710RBS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF146ZZM|/files/ENCFF146ZZM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11696262 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF828NMX|/files/ENCFF828NMX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12538741 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DVO | float |
Histone_ChIP-seq_ENCSR000DVO |
Histone_ChIP-seq ENCSR000DVO [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K27me3"]
|
 |
[1.82, 18.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35417201 | 1.10% | 99937 |
| chr1 | 3442679 | 1.38% | 9616 |
| chr2 | 2993658 | 1.24% | 8454 |
| chr3 | 2046321 | 1.03% | 6158 |
| chr4 | 1605858 | 0.84% | 4555 |
| chr5 | 2109778 | 1.16% | 5949 |
| chr6 | 2344950 | 1.37% | 6680 |
| chr7 | 1757343 | 1.10% | 5017 |
| chr8 | 1844964 | 1.27% | 5442 |
| chr9 | 1529342 | 1.11% | 4290 |
| chr10 | 2096265 | 1.57% | 5784 |
| chr11 | 1943547 | 1.44% | 5500 |
| chr12 | 1690702 | 1.27% | 4697 |
| chr13 | 1070374 | 0.94% | 3160 |
| chr14 | 1223606 | 1.14% | 3374 |
| chr15 | 1385445 | 1.36% | 3736 |
| chr16 | 690127 | 0.76% | 1897 |
| chr17 | 1698527 | 2.04% | 4402 |
| chr18 | 762580 | 0.95% | 2281 |
| chr19 | 692425 | 1.18% | 1718 |
| chr20 | 1026486 | 1.59% | 2886 |
| chr21 | 523638 | 1.12% | 1505 |
| chr22 | 602627 | 1.19% | 1807 |
| chrX | 331551 | 0.21% | 1016 |
| chrY | 4408 | 0.01% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 99937 | 145 | 10830 | 354.4 | 253 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF919ZCR.bed.gz | 1.82 MB | 297dcd77c7c84bb928ee130dd25345fd |
| ENCFF919ZCR.tabix.bed.gz | 958.69 KB | 411ea5ca7bcdd60ec8ad8c4176607ae7 |
| ENCFF919ZCR.tabix.bed.gz.tbi | 227.86 KB | a4bd484a9368daef961e3de7f7703cb9 |
| genomic_resource.yaml | 2.91 KB | 3d8e759f5557bc9af3d9785aad5ba8fb |
| statistics/ |