type: position_score
table:
  filename: ENCFF195VOR.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000DVM
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR000DVM [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K36me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR000DVM [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K36me3"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: newborn


    **output\_type**: replicated peaks


    **audit\_internal\_action**: Archived analysis {ENCAN141AAW|/analyses/ENCAN141AAW/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF055MXS|/files/ENCFF055MXS/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 13202542 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_not\_compliant**: Processed alignments file {ENCFF471DQY|/files/ENCFF471DQY/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 12865231 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DVM
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: newborn
    biosample_summary: Homo sapiens endothelial cell of umbilical vein newborn
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002618/
    perturbed: false
    doi: 10.17989/ENCSR000DVM
    date_created: '2014-02-12T23:07:07.731101+00:00'
    date_released: '2011-02-11'
    submitter_comment: Replicate 1,1 of this experiment was previously attributed
      to biosample ENCBS677AAA and replicate 2,1 of this experiment was previously
      attributed to biosample ENCBS677AAA but they have since been corrected to the
      current biosamples. Please note that the biosample term has remain unchanged.
      As of August 2022, the donors associated with the biosamples in this dataset
      were changed from ENCDO342AAA to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
    target: H3K36me3
