Resource
| Id | Histone_ChIP-seq/ENCSR000DVE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DVE [biosample_summary="Homo sapiens kidney epithelial cell" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN695KVR|/analyses/ENCAN695KVR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF130UJA|/files/ENCFF130UJA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12642315 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF852MAO|/files/ENCFF852MAO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11274083 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DVE | float |
Histone_ChIP-seq_ENCSR000DVE |
Histone_ChIP-seq ENCSR000DVE [biosample_summary="Homo sapiens kidney epithelial cell" and target="H3K36me3"]
|
 |
[2.01, 8.16] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5437192 | 0.17% | 30290 |
| chr1 | 499813 | 0.20% | 2800 |
| chr2 | 339817 | 0.14% | 1951 |
| chr3 | 315625 | 0.16% | 1761 |
| chr4 | 170649 | 0.09% | 975 |
| chr5 | 237933 | 0.13% | 1333 |
| chr6 | 222073 | 0.13% | 1263 |
| chr7 | 258240 | 0.16% | 1461 |
| chr8 | 167420 | 0.12% | 965 |
| chr9 | 258804 | 0.19% | 1442 |
| chr10 | 213380 | 0.16% | 1202 |
| chr11 | 306173 | 0.23% | 1689 |
| chr12 | 293780 | 0.22% | 1664 |
| chr13 | 113782 | 0.10% | 650 |
| chr14 | 167126 | 0.16% | 933 |
| chr15 | 182432 | 0.18% | 1024 |
| chr16 | 276859 | 0.31% | 1534 |
| chr17 | 376655 | 0.45% | 2042 |
| chr18 | 81309 | 0.10% | 470 |
| chr19 | 435326 | 0.74% | 2303 |
| chr20 | 197485 | 0.31% | 1085 |
| chr21 | 79031 | 0.17% | 431 |
| chr22 | 205535 | 0.40% | 1081 |
| chr22_KI270733v1_random | 129 | 0.07% | 1 |
| chrUn_GL000195v1 | 115 | 0.06% | 1 |
| chrX | 37701 | 0.02% | 229 |
| 3341 contigs with no values (185941832 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30290 | 115 | 1325 | 179.5 | 157 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF699QNO.bed.gz | 514.15 KB | 46716fa76e58b264ffa89c9fbcbffa96 |
| ENCFF699QNO.tabix.bed.gz | 284.97 KB | 8b122bba7115f3ae076886dcb498071a |
| ENCFF699QNO.tabix.bed.gz.tbi | 123.26 KB | 04981c19df88b53980e7fa6cc8b652ed |
| genomic_resource.yaml | 2.72 KB | 4ee6b8b1873162e56566242c6d9275a5 |
| statistics/ |