Histone_ChIP-seq_ENCSR000DTT
Histone_ChIP-seq ENCSR000DTT [biosample_summary="Homo sapiens epithelial cell of esophagus" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DTT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DTT [biosamplesummary="Homo sapiens epithelial cell of esophagus" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN126MGS|/analyses/ENCAN126MGS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF519BSD|/files/ENCFF519BSD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF519BSD|/files/ENCFF519BSD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.42. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF275LFR|/files/ENCFF275LFR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF275LFR|/files/ENCFF275LFR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.73. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DTT | float |
Histone_ChIP-seq_ENCSR000DTT |
Histone_ChIP-seq ENCSR000DTT [biosample_summary="Homo sapiens epithelial cell of esophagus" and target="H3K4me3"]
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[2.1, 73.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF565PHW.bed.gz | 684.66 KB | d0dcc4d2f96ef23b73dcbc96f57e5897 |
| ENCFF565PHW.bed.gz.dvc | 100.0 B | d5ee81c5f1b18a3708dc8f8b9f6b73ce |
| ENCFF565PHW.tabix.bed.gz | 327.44 KB | bfec96f54505f56e9e8a27099cacefac |
| ENCFF565PHW.tabix.bed.gz.dvc | 106.0 B | fc9b6d31941451e03ec3171c8dea52e0 |
| ENCFF565PHW.tabix.bed.gz.tbi | 149.84 KB | c591071837c95e817934d09d3cc85071 |
| ENCFF565PHW.tabix.bed.gz.tbi.dvc | 110.0 B | 6dbd72a9c0539f3a004c422bd0cccbed |
| genomic_resource.yaml | 4.33 KB | 09b3cadddbc64128c402c90fca2d8041 |
| genomic_resource_original.yaml | 4.2 KB | 1ff2330e23a0b29cf6a81786f55fa89b |
| statistics/ |