Histone_ChIP-seq_ENCSR000DTQ
Histone_ChIP-seq ENCSR000DTQ [biosample_summary="Homo sapiens HCT116" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR000DTQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DTQ [biosamplesummary="Homo sapiens HCT116" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN614HNE|/analyses/ENCAN614HNE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN614HNE|/analyses/ENCAN614HNE/} has in progress subobject document {59538a9c-dfd6-46d7-9c56-72be9eaea02c|/documents/59538a9c-dfd6-46d7-9c56-72be9eaea02c/} audit_warning: Processed alignments file {ENCFF013LEY|/files/ENCFF013LEY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 18916015 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF013LEY|/files/ENCFF013LEY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF013LEY|/files/ENCFF013LEY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF178XNO|/files/ENCFF178XNO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF178XNO|/files/ENCFF178XNO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.43. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DTQ | float |
Histone_ChIP-seq_ENCSR000DTQ |
Histone_ChIP-seq ENCSR000DTQ [biosample_summary="Homo sapiens HCT116" and target="H3K4me3"]
|
|
[1.89, 121] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF187LLD.bed.gz | 651.87 KB | a9df0277b6f3fe0f5dbb9e72a2d37f77 |
| ENCFF187LLD.bed.gz.dvc | 100.0 B | 2edf3bbfb7a48d5ed2cccfbeb3e7b068 |
| ENCFF187LLD.tabix.bed.gz | 291.62 KB | a6afffe9101404510c29c6f9ca821154 |
| ENCFF187LLD.tabix.bed.gz.dvc | 106.0 B | 36e71eaa091e163f378c9669ceb9db35 |
| ENCFF187LLD.tabix.bed.gz.tbi | 141.08 KB | 53e5c11e5f09f334e403f1625a42d351 |
| ENCFF187LLD.tabix.bed.gz.tbi.dvc | 110.0 B | 5089a4ac3b2e3c4502339d6f08894c44 |
| genomic_resource.yaml | 4.72 KB | ad15be60d4752b61d7d9dd5c5431d915 |
| genomic_resource_original.yaml | 4.61 KB | 2bd76cea4552e5ac52bad014f88187e4 |
| statistics/ |