Histone_ChIP-seq_ENCSR000DTE
Histone_ChIP-seq ENCSR000DTE [biosample_summary="Homo sapiens cardiac fibroblast" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DTE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DTE [biosamplesummary="Homo sapiens cardiac fibroblast" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN593HII|/analyses/ENCAN593HII/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN593HII|/analyses/ENCAN593HII/} has in progress subobject document {c3309358-3462-45d9-8d16-5d8eb04d4dab|/documents/c3309358-3462-45d9-8d16-5d8eb04d4dab/} audit_warning: Processed alignments file {ENCFF383HTH|/files/ENCFF383HTH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13596821 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF489CJB|/files/ENCFF489CJB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19632912 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF383HTH|/files/ENCFF383HTH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF383HTH|/files/ENCFF383HTH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF489CJB|/files/ENCFF489CJB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF489CJB|/files/ENCFF489CJB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DTE | float |
Histone_ChIP-seq_ENCSR000DTE |
Histone_ChIP-seq ENCSR000DTE [biosample_summary="Homo sapiens cardiac fibroblast" and target="H3K4me3"]
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[2.07, 163] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF532VDS.bed.gz | 673.84 KB | 3409b1952d68def666687f671283d892 |
| ENCFF532VDS.bed.gz.dvc | 100.0 B | aade407faf115c0d162ebd4d7b3f5558 |
| ENCFF532VDS.tabix.bed.gz | 312.87 KB | 08ff94c1c565c42ca4a0bb32ecd4676f |
| ENCFF532VDS.tabix.bed.gz.dvc | 106.0 B | 1c49d3e6986645f964ac8ae348a51c75 |
| ENCFF532VDS.tabix.bed.gz.tbi | 148.14 KB | d1bf2268efb3fa5661722f7ce02ac80d |
| ENCFF532VDS.tabix.bed.gz.tbi.dvc | 110.0 B | 2f2c0548d3cf39dc68b6956379aa00b3 |
| genomic_resource.yaml | 5.46 KB | 1d8e277fca8f544fa62f765039769c80 |
| genomic_resource_original.yaml | 5.34 KB | 0ede4308739652fbca619c383bc23fad |
| statistics/ |