Histone_ChIP-seq_ENCSR000DST
Histone_ChIP-seq ENCSR000DST [biosample_summary="Homo sapiens H7" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DST |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DST [biosamplesummary="Homo sapiens H7" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN621OIG|/analyses/ENCAN621OIG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN621OIG|/analyses/ENCAN621OIG/} has in progress subobject document {d3ae894c-bb95-4fba-a1d2-afc550e8f507|/documents/d3ae894c-bb95-4fba-a1d2-afc550e8f507/} audit_not_compliant: Processed alignments file {ENCFF198VKK|/files/ENCFF198VKK/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 9837107 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF250SOU|/files/ENCFF250SOU/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 16969020 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF250SOU|/files/ENCFF250SOU/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF250SOU|/files/ENCFF250SOU/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DST | float |
Histone_ChIP-seq_ENCSR000DST |
Histone_ChIP-seq ENCSR000DST [biosample_summary="Homo sapiens H7" and target="H3K27me3"]
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[1.96, 57.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF662NTZ.bed.gz | 865.23 KB | 1e5f5edb6be222d62d4b2148487ab7ef |
| ENCFF662NTZ.bed.gz.dvc | 100.0 B | c3481309e2ba9bcde7998af74b151bb7 |
| ENCFF662NTZ.tabix.bed.gz | 438.89 KB | 74f9743772497634163344a97ff121cf |
| ENCFF662NTZ.tabix.bed.gz.dvc | 106.0 B | e36d1a152041122f1828129de452f3da |
| ENCFF662NTZ.tabix.bed.gz.tbi | 120.06 KB | 8c3a59fdae92c5c39ea97d252e5d405d |
| ENCFF662NTZ.tabix.bed.gz.tbi.dvc | 110.0 B | 0e26ccc23e825cc8000d0ccf66403910 |
| genomic_resource.yaml | 4.22 KB | f3dad0fd5a95ea01aec4d3b383b331a2 |
| genomic_resource_original.yaml | 4.11 KB | b1420c851d1b4e6b2a43a21276fceb78 |
| statistics/ |