Resource
| Id | Histone_ChIP-seq/ENCSR000DSS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DSS [biosample_summary="Homo sapiens H7" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN782XEF|/analyses/ENCAN782XEF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF948WMH|/files/ENCFF948WMH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16132900 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF989QWN|/files/ENCFF989QWN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13329805 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DSS | float |
Histone_ChIP-seq_ENCSR000DSS |
Histone_ChIP-seq ENCSR000DSS [biosample_summary="Homo sapiens H7" and target="H3K36me3"]
|
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[2.08, 23] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 26679192 | 0.83% | 128599 |
| chr1 | 2907605 | 1.17% | 13648 |
| chr2 | 1618782 | 0.67% | 8282 |
| chr3 | 1498626 | 0.76% | 7395 |
| chr4 | 770104 | 0.40% | 4158 |
| chr5 | 1262602 | 0.70% | 6376 |
| chr6 | 1129807 | 0.66% | 5697 |
| chr7 | 1180144 | 0.74% | 5848 |
| chr8 | 746139 | 0.51% | 3952 |
| chr9 | 1140864 | 0.82% | 5464 |
| chr10 | 979354 | 0.73% | 4960 |
| chr11 | 1415257 | 1.05% | 6620 |
| chr12 | 1648537 | 1.24% | 7635 |
| chr13 | 348777 | 0.30% | 2031 |
| chr14 | 796425 | 0.74% | 4003 |
| chr15 | 884697 | 0.87% | 4342 |
| chr16 | 1382469 | 1.53% | 6266 |
| chr17 | 1771112 | 2.13% | 7997 |
| chr18 | 303807 | 0.38% | 1705 |
| chr19 | 2046509 | 3.49% | 8896 |
| chr20 | 988700 | 1.53% | 4411 |
| chr21 | 330656 | 0.71% | 1575 |
| chr22 | 888431 | 1.75% | 3972 |
| chrX | 639390 | 0.41% | 3364 |
| chrY | 398 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 128599 | 75 | 3895 | 207.46 | 155 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF488DRS.bed.gz | 2.08 MB | 3ac57f4dc65320cfc4919b2067a6c690 |
| ENCFF488DRS.tabix.bed.gz | 1.12 MB | d98d694bc1fd1b85c0f8ad962a604d22 |
| ENCFF488DRS.tabix.bed.gz.tbi | 167.17 KB | 5cfe2972840657cba21fe92501627d3a |
| genomic_resource.yaml | 2.66 KB | 7172970e0c19acdf35e88d7a70a693b0 |
| statistics/ |
