Resource
| Id | Histone_ChIP-seq/ENCSR000DRX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DRX [biosample_summary="Homo sapiens GM12878" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN452ZJA|/analyses/ENCAN452ZJA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN452ZJA|/analyses/ENCAN452ZJA/} has in progress subobject document {f674f66a-5fba-417c-9e20-d529a058193c|/documents/f674f66a-5fba-417c-9e20-d529a058193c/} audit_not_compliant: Processed alignments file {ENCFF265UBT|/files/ENCFF265UBT/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 10821814 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF824VSE|/files/ENCFF824VSE/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 14765423 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DRX | float |
Histone_ChIP-seq_ENCSR000DRX |
Histone_ChIP-seq ENCSR000DRX [biosample_summary="Homo sapiens GM12878" and target="H3K27me3"]
|
![]() |
[2.07, 10.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5902620 | 0.18% | 25814 |
| chr1 | 642296 | 0.26% | 2837 |
| chr2 | 499354 | 0.21% | 2213 |
| chr3 | 327327 | 0.17% | 1480 |
| chr4 | 194312 | 0.10% | 831 |
| chr5 | 294017 | 0.16% | 1283 |
| chr6 | 332684 | 0.19% | 1458 |
| chr7 | 283666 | 0.18% | 1244 |
| chr8 | 239256 | 0.16% | 1066 |
| chr9 | 272923 | 0.20% | 1184 |
| chr10 | 336405 | 0.25% | 1492 |
| chr11 | 434941 | 0.32% | 1909 |
| chr12 | 305439 | 0.23% | 1286 |
| chr13 | 106490 | 0.09% | 473 |
| chr14 | 170457 | 0.16% | 749 |
| chr15 | 231464 | 0.23% | 987 |
| chr16 | 147930 | 0.16% | 639 |
| chr17 | 364244 | 0.44% | 1467 |
| chr18 | 115865 | 0.14% | 556 |
| chr19 | 131598 | 0.22% | 544 |
| chr20 | 250351 | 0.39% | 1107 |
| chr21 | 47589 | 0.10% | 209 |
| chr22 | 138176 | 0.27% | 605 |
| chrX | 35836 | 0.02% | 195 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 25814 | 125 | 1627 | 228.66 | 191 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF695ETB.bed.gz | 435.34 KB | 850862bc88b52830686d31105976ff65 |
| ENCFF695ETB.tabix.bed.gz | 242.33 KB | d1e20a03914e965740f1c46f80acd9cd |
| ENCFF695ETB.tabix.bed.gz.tbi | 114.55 KB | ffb28061a5035dca2da6091c3ab72085 |
| genomic_resource.yaml | 2.91 KB | 370857c8954094f44a9fe87b639d6c6a |
| statistics/ |
