Resource

Id Histone_ChIP-seq/ENCSR000DRScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DRS [biosample_summary="Homo sapiens GM12875" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR000DRS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001162/
  • biosample_summary: Homo sapiens GM12875
  • date_created: 2013-12-12T06:56:55.859828+00:00
  • date_released: 2011-11-17
  • doi: 10.17989/ENCSR000DRS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 1,1 of this experiment was previously attributed to biosample ENCBS219AAA but it has since been corrected to the current biosample. Please note that the biosample term has remain unchanged.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DRS float

Histone_ChIP-seq_ENCSR000DRS

Histone_ChIP-seq ENCSR000DRS [biosample_summary="Homo sapiens GM12875" and target="H3K4me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DRS [1.9, 87]
n
27,720,000
mean
31
sd
17.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277200000.86% 27148
chr1 2795408 1.12% 2740
chr2 1764282 0.73% 1690
chr3 1588504 0.80% 1487
chr4 1023930 0.54% 975
chr5 1367908 0.75% 1251
chr6 1406435 0.82% 1425
chr7 1303950 0.82% 1328
chr8 1057853 0.73% 1020
chr9 1124977 0.81% 1125
chr10 1164380 0.87% 1140
chr11 1508601 1.12% 1405
chr12 1521108 1.14% 1487
chr13 556686 0.49% 551
chr14 934284 0.87% 961
chr15 919398 0.90% 868
chr16 1112672 1.23% 1085
chr17 1681087 2.02% 1592
chr18 431797 0.54% 443
chr19 1932168 3.30% 1973
chr20 625317 0.97% 607
chr21 305833 0.65% 296
chr22 700179 1.38% 703
chrX 892650 0.57% 995
chrY 593 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27148 155 11005 1021.07 732
global segment-length histogram

Files

Filename Size md5
ENCFF770THI.bed.gz 674.92 KB e4b5582277d88b55bc18dc00d9526c1e
ENCFF770THI.tabix.bed.gz 297.95 KB 475adaf40cc4374c666e43a34facb12b
ENCFF770THI.tabix.bed.gz.tbi 134.3 KB db002392e46e67834f9a160859cf9d74
genomic_resource.yaml 2.07 KB e5299fad443700fcf1e50eb4dad3aa75
statistics/