Histone_ChIP-seq_ENCSR000DRC
Histone_ChIP-seq ENCSR000DRC [biosample_summary="Homo sapiens GM12865" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR000DRC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DRC [biosamplesummary="Homo sapiens GM12865" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN327RDM|/analyses/ENCAN327RDM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF447JKC|/files/ENCFF447JKC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14268339 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF575COH|/files/ENCFF575COH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF575COH|/files/ENCFF575COH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.00. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DRC | float |
Histone_ChIP-seq_ENCSR000DRC |
Histone_ChIP-seq ENCSR000DRC [biosample_summary="Homo sapiens GM12865" and target="H3K4me3"]
|
|
[1.78, 62.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF573SCA.bed.gz | 916.56 KB | 5644da0597dde0573295bd155c19243d |
| ENCFF573SCA.bed.gz.dvc | 100.0 B | 43ad45e21af7f79a2d328c420fc6b48b |
| ENCFF573SCA.tabix.bed.gz | 402.13 KB | b1e03c8ccd5f211d267527300239ec08 |
| ENCFF573SCA.tabix.bed.gz.dvc | 106.0 B | 8bfe5020bb1619fc3f5f72327270ae10 |
| ENCFF573SCA.tabix.bed.gz.tbi | 160.94 KB | 8f38982cb14f0d673a4eab748322e474 |
| ENCFF573SCA.tabix.bed.gz.tbi.dvc | 110.0 B | 4f951dc8690fbfc3885a8d8bb7b6ace3 |
| genomic_resource.yaml | 3.46 KB | 9a1c1e2c47acf234f3e96382564c78a4 |
| genomic_resource_original.yaml | 3.35 KB | daf366a457cfc5267d5905a906c256c3 |
| statistics/ |