Histone_ChIP-seq_ENCSR000DQZ
Histone_ChIP-seq ENCSR000DQZ [biosample_summary="Homo sapiens GM12864" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DQZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DQZ [biosamplesummary="Homo sapiens GM12864" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN266OIU|/analyses/ENCAN266OIU/} has in progress subobject document {04498b0f-bd4b-4e24-a565-260ece995ad8|/documents/04498b0f-bd4b-4e24-a565-260ece995ad8/} audit_internal_action: Released analysis {ENCAN266OIU|/analyses/ENCAN266OIU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF248PKA|/files/ENCFF248PKA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 17982711 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF248PKA|/files/ENCFF248PKA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF248PKA|/files/ENCFF248PKA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF498KPF|/files/ENCFF498KPF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF498KPF|/files/ENCFF498KPF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQZ | float |
Histone_ChIP-seq_ENCSR000DQZ |
Histone_ChIP-seq ENCSR000DQZ [biosample_summary="Homo sapiens GM12864" and target="H3K4me3"]
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[1.87, 77.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF704LTU.bed.gz | 756.13 KB | d95440fabbeb28071303826766241a3e |
| ENCFF704LTU.bed.gz.dvc | 100.0 B | ce3caa4c7b83ea565050cc6d2a1a3ff0 |
| ENCFF704LTU.tabix.bed.gz | 332.6 KB | 97246a9822401f79dd56fe9b4a0829b6 |
| ENCFF704LTU.tabix.bed.gz.dvc | 106.0 B | ae790f6e9f97defd7e28e4ca33b87792 |
| ENCFF704LTU.tabix.bed.gz.tbi | 146.67 KB | 02aa253307c080a46e7ffa771adae98d |
| ENCFF704LTU.tabix.bed.gz.tbi.dvc | 110.0 B | e76f4d5e2393dde4d8973c06618e804b |
| genomic_resource.yaml | 5.03 KB | 4846a3eba5b83917409d07c2842033fc |
| genomic_resource_original.yaml | 4.92 KB | 9435727471599905b13384ab0a80e9e0 |
| statistics/ |