Resource
| Id | Histone_ChIP-seq/ENCSR000DQU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQU [biosample_summary="Homo sapiens GM06990" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN957FZJ|/analyses/ENCAN957FZJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF778KXZ|/files/ENCFF778KXZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9136227 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF458QQR|/files/ENCFF458QQR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13687837 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQU | float |
Histone_ChIP-seq_ENCSR000DQU |
Histone_ChIP-seq ENCSR000DQU [biosample_summary="Homo sapiens GM06990" and target="H3K27me3"]
|
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[2.36, 8.74] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3378766 | 0.11% | 18005 |
| chr1 | 381662 | 0.15% | 2019 |
| chr2 | 248562 | 0.10% | 1355 |
| chr3 | 204177 | 0.10% | 1102 |
| chr4 | 95107 | 0.05% | 513 |
| chr5 | 179415 | 0.10% | 959 |
| chr6 | 160623 | 0.09% | 874 |
| chr7 | 146035 | 0.09% | 783 |
| chr8 | 120873 | 0.08% | 661 |
| chr9 | 170867 | 0.12% | 907 |
| chr10 | 213586 | 0.16% | 1116 |
| chr11 | 283148 | 0.21% | 1516 |
| chr12 | 170358 | 0.13% | 866 |
| chr13 | 56699 | 0.05% | 311 |
| chr14 | 91623 | 0.09% | 492 |
| chr15 | 148082 | 0.15% | 766 |
| chr16 | 104476 | 0.12% | 551 |
| chr17 | 197190 | 0.24% | 1023 |
| chr18 | 73132 | 0.09% | 409 |
| chr19 | 69333 | 0.12% | 365 |
| chr20 | 132506 | 0.21% | 712 |
| chr21 | 31331 | 0.07% | 164 |
| chr22 | 72730 | 0.14% | 375 |
| chrX | 27251 | 0.02% | 166 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 18005 | 125 | 1187 | 187.66 | 166 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF053LMS.bed.gz | 296.12 KB | 8c9cb939845362d29828f61917e7bc2a |
| ENCFF053LMS.tabix.bed.gz | 168.94 KB | ef6631d0bbf6f18cb53c05ecb88ed822 |
| ENCFF053LMS.tabix.bed.gz.tbi | 103.42 KB | 8b1c57aa0ba40579772398876a36c14f |
| genomic_resource.yaml | 2.68 KB | f5745dba0c0e3f280842fecc0f341f9b |
| statistics/ |
